View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6771_low_1 (Length: 1049)

Name: NF6771_low_1
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6771_low_1
NF6771_low_1
[»] chr4 (8 HSPs)
chr4 (19-412)||(26500530-26500921)
chr4 (498-766)||(26501007-26501275)
chr4 (19-314)||(1798687-1798982)
chr4 (19-274)||(10388143-10388397)
chr4 (805-929)||(26501314-26501438)
chr4 (36-283)||(17416852-17417100)
chr4 (988-1030)||(26501497-26501539)
chr4 (350-412)||(1798568-1798630)
[»] chr3 (5 HSPs)
chr3 (19-314)||(16284602-16284897)
chr3 (19-314)||(17324409-17324704)
chr3 (72-159)||(2787175-2787263)
chr3 (344-412)||(17324755-17324822)
chr3 (343-410)||(16284485-16284552)
[»] chr5 (6 HSPs)
chr5 (60-303)||(29685347-29685593)
chr5 (19-314)||(39368454-39368744)
chr5 (36-283)||(25341147-25341395)
chr5 (343-404)||(29685225-29685286)
chr5 (343-412)||(39368335-39368404)
chr5 (361-409)||(39368215-39368263)
[»] chr1 (8 HSPs)
chr1 (29-209)||(4391248-4391430)
chr1 (19-156)||(38709645-38709783)
chr1 (145-214)||(15209647-15209716)
chr1 (343-401)||(38709454-38709512)
chr1 (343-404)||(4391101-4391162)
chr1 (361-404)||(38709336-38709379)
chr1 (237-302)||(38709574-38709638)
chr1 (502-545)||(4390906-4390949)
[»] chr8 (6 HSPs)
chr8 (23-288)||(1578702-1578967)
chr8 (19-202)||(38387559-38387743)
chr8 (184-288)||(8044735-8044838)
chr8 (345-412)||(8044915-8044982)
chr8 (343-404)||(1578165-1578226)
chr8 (175-248)||(38387481-38387554)
[»] chr2 (2 HSPs)
chr2 (19-208)||(4397679-4397869)
chr2 (72-177)||(42049029-42049135)
[»] chr7 (4 HSPs)
chr7 (180-303)||(2569829-2569951)
chr7 (344-412)||(2569699-2569767)
chr7 (74-177)||(17803376-17803477)
chr7 (362-409)||(2569578-2569625)
[»] chr6 (1 HSPs)
chr6 (74-143)||(31303555-31303625)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 26500530 - 26500921
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcatacgacgacgaacgattcggga 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26500530 caacctgcaacaccaccacctgaatagaccgacgcaaaccccaaccctcagctagacaaccacaaaccaccacgatcatacgacgacgaacgatccggga 26500629  T
Q  119 gttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacacg 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  26500630 gttgcgaagaaggaggattaatcgttaaggacctgcagccgtcggcaactgaccagtaaggaaggcttaaggtgcaacaaacgactactccgtcaacaca 26500729  T
Q  219 aaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcaggatgccactagcggcaatgcttcgaaggnnnn 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        
T  26500730 aaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcaggatgccgctagcggcaatgcttcgaagg--aa 26500827  T
Q  319 nnnnncaacaaaaccgacaagacgcgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 412  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26500828 aaaaacaacaaaaccgacaagacgcgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 26500921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 498 - 766
Target Start/End: Original strand, 26501007 - 26501275
Alignment:
Q  498 gctgagggagaccttaaacaacttcgaccctagtcctttgacagaacacaaccaataggcgtatcttttgtcgggcgttaactttctgttttctctagtt 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26501007 gctgagggagaccttaaacaacttcgaccctagtcctttgacagaacacaaccaataggcgtatcttttgtcgggcgttagctttctgttttctctagtt 26501106  T
Q  598 tattttttgccttctttcccacttgtaaccaaaatatttgctaccnnnnnnnatttggataagtaattcaaatgctactttgatattaaaatgcaatatc 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||    
T  26501107 tattttttgccttctttcccacttgtaaccaaaatatttgctacctttttttatttggataagtaattcaaatgctactttgatattaaaattcaatatc 26501206  T
Q  698 gtgctatacattcctactactagtatgcatgggtctgctatattacattattgtcaaatacactattgt 766  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26501207 gtgctatacattcgtactactagtatgcatgggtctgctatattacattattgtcaaatacactattgt 26501275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 1798982 - 1798687
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcggg 117  Q
    ||||||||| |||||||||||||||||| || |||| ||| |||||||| ||||||||||||||||||||||||||| | |||| |||||||||| ||||    
T  1798982 caacctgcatcaccaccacctgaatagatcggcgcacaccccaaccctcggctagacaaccacaaaccaccacgatccttacgaagacgaacgatccggg 1798883  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacac 217  Q
    |||||||||||||||||||||||||| || ||| || | |||| ||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1798882 agttgcgaagaaggaggattaatcgtgaaagacatgaacccgtcggcaaccaagcagtcaggacggcttaaggtgcaacaaacgactactccgtcaacac 1798783  T
Q  218 gaaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcaggatgccactagcggcaatgcttcgaagg 314  Q
     || ||| | ||||||||  ||||||||||||||| | ||||| ||| ||||||| ||||||||||||||| ||| | || ||||| ||||||||||    
T  1798782 aaagcatgtacacacctagatctttcgagcaacaacaaccaagtaactaaatcct-aatccaagagcaggaggcctccagtggcaaggcttcgaagg 1798687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 10388397 - 10388143
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcggg 117  Q
    ||||||||| ||||||||||||||||||| | ||||  ||  || |||| |||||||||||||||||||||| |||| | ||||||||||||||| ||||    
T  10388397 caacctgcatcaccaccacctgaatagactggcgca--cccaaaacctcggctagacaaccacaaaccaccatgatccttacgacgacgaacgatccggg 10388300  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacac 217  Q
    ||||||||||||||||||||||| || ||||||||||   |    |||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||    
T  10388299 agttgcgaagaaggaggattaattgtgaaggacctgctttctcctgcaactgagcagtcaagaaagcttaaggtgcaacaaacgaccactccgtcaacac 10388200  T
Q  218 gaaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaa 274  Q
    ||| |||||||||||||||||||||| |||||| | | |||||||||||||||||||    
T  10388199 gaagcatctgcacacctaactctttcaagcaaccacaaccaagcaaccaaatcctaa 10388143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 805 - 929
Target Start/End: Original strand, 26501314 - 26501438
Alignment:
Q  805 taatccatgatgatgtcactgtcagcatcacacaccgtagaaacatgctttactattctgactgcctctacttggtagttggtacgtgctactatttata 904  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26501314 taatccatgatgatgtcactgtcagcatcacacaccgtagaaacatgctttactattctgactgcctctacttggtagttggtacgtgttactatttata 26501413  T
Q  905 gaacttcattccataaaatgctatg 929  Q
    |||||||||||||||||||| ||||    
T  26501414 gaacttcattccataaaatgatatg 26501438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 36 - 283
Target Start/End: Original strand, 17416852 - 17417100
Alignment:
Q  36 acctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcgggagttgcgaagaaggagg 134  Q
    |||||||||||||| | || ||| ||||||||  |||||||||||||||||| ||||||| | ||||||||||||||| | | |||| | ||||| || |    
T  17416852 acctgaatagaccggcacacaccccaaccctcgactagacaaccacaaaccatcacgatccttacgacgacgaacgatccagtagttacaaagaatgatg 17416951  T
Q  135 attaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacacgaaacatctgcacacct 234  Q
    ||||||||| ||||| ||||| |||  |||||| || | |||| |||||| ||| |||  ||||| |||||||||||||||||||| ||||| |||||||    
T  17416952 attaatcgtgaaggatctgcaaccgccggcaacagagcggtcatgaaggcctaaagtgtgacaaatgactactccgtcaacacgaagcatctacacacct 17417051  T
Q  235 aactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagag 283  Q
    | |||||| ||||||||| | |||| |||||||||| ||||||||||||    
T  17417052 agctcttttgagcaacaacaaccaaacaaccaaatcttaaatccaagag 17417100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 988 - 1030
Target Start/End: Original strand, 26501497 - 26501539
Alignment:
Q  988 ttatcctttcttaagtcatatagcaactttccgatggctattg 1030  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26501497 ttatcctttcttaagtcatatagcaactttccgatggctattg 26501539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 1798630 - 1798568
Alignment:
Q  350 gagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 412  Q
    ||||||||||||||| |||||||  || |||||||||||||  |||| ||||||| |||||||    
T  1798630 gagaagaaagtgaactaccaaaaatctaagggagatctagaaggcctggaccctagacccttg 1798568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 7e-95; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 16284897 - 16284602
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcggg 117  Q
    ||||||||| ||||||||| ||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||    
T  16284897 caacctgcatcaccaccacatgaatagaccggcgcacaccccaaccctcagcttgacaaccacaaaccaccacgatccttacgacggcgaacgattcggg 16284798  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacac 217  Q
    |||||||||||||||| ||||||||| ||||||||||| |||  | ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  16284797 agttgcgaagaaggagaattaatcgtgaaggacctgcacccgccgacaactgagcagtcaggaaggcttaaggtgcatcaaacgactactccatcaacac 16284698  T
Q  218 gaaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcaggatgccactagcggcaatgcttcgaagg 314  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||| ||| | |||||||| ||| ||||||    
T  16284697 gaagcatctgcacacctaactctttcgagcaacaacagccaagcaatcaaaacct-aatccaagagcaggaggcctccagcggcaaggctccgaagg 16284602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 17324409 - 17324704
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcggg 117  Q
    ||||||||| ||||||||| ||||||||||  |||  ||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||    
T  17324409 caacctgcatcaccaccacttgaatagacctgcgctcaccccaaccctcagctagacaaccacaaaccaccacgatccttacgacaacgaacgatccggg 17324508  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacac 217  Q
    ||||||||| |||||||| |||||||  |||||||||| |||  || |||||| || ||| ||||||||||||||||| |||||||||||||||||| ||    
T  17324509 agttgcgaaaaaggaggactaatcgtggaggacctgcacccgccgggaactgagcattcaagaaggcttaaggtgcaaaaaacgactactccgtcaatac 17324608  T
Q  218 gaaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcaggatgccactagcggcaatgcttcgaagg 314  Q
    ||||||||| |||||||| |||||||||||||||| | |||| |||| ||||| | | |||||||||| || ||| |||||||||| ||| ||||||    
T  17324609 gaaacatctacacacctagctctttcgagcaacaacatccaaacaacaaaatcgt-agtccaagagcaagaggcctctagcggcaaagctccgaagg 17324704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 2787175 - 2787263
Alignment:
Q  72 agacaaccacaaaccaccacgatcat-acgacgacgaacgattcgggagttgcgaagaaggaggattaatcgttaaggacctgcagccg 159  Q
    |||||||| |||||||||| |||| | ||||||||||||| | | | |||||||||||||||||||||||||| ||| || ||||||||    
T  2787175 agacaaccgcaaaccaccatgatccttacgacgacgaacgttccagaagttgcgaagaaggaggattaatcgtgaagaacttgcagccg 2787263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 17324755 - 17324822
Alignment:
Q  344 gaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 412  Q
    |||||||| |||||||||||||| ||||||  ||||||||||||||| ||||||||||||| |||||||    
T  17324755 gaccctgacaagaaagtgaaccatcaaaagt-tgagggagatctagatagcctcgaccctagacccttg 17324822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 16284552 - 16284485
Alignment:
Q  343 cgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctataccct 410  Q
    |||||||  ||||||||||||||||||||  ||||||||||||||  | ||||||||||||| |||||    
T  16284552 cgaccctacgaagaaagtgaaccaccaaattgctgagggagatctgaatagcctcgaccctagaccct 16284485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 5e-68; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 60 - 303
Target Start/End: Complemental strand, 29685593 - 29685347
Alignment:
Q  60 caaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcgggagttgcgaagaaggaggattaatcgttaaggacctgcagcc 158  Q
    |||||| | |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |    
T  29685593 caacccacggctagaaaaccacaaaccaccacgatccttacgacgacgaacgattcgggagttgcgaagaaggaggattaatcgtgaaggacctgcaagc 29685494  T
Q  159 gttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacacgaaacatctgcacacctaactctttcgagcaacaatagcca 258  Q
    |  | |||| || | |||  || |||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||| |||||    
T  29685493 gccgacaacagagcggtcgtgatggcttaaggtgcgacaaacgactactccgtcaacatgaagcatctgcacacctagctcttttgagcaacaacagcca 29685394  T
Q  259 agcaaccaaatcctaaatccaagag--caggatgccactagcggcaa 303  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||    
T  29685393 agcaaccaaatcctaaatccaagagaacaggacgccaccagcggcaa 29685347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 39368744 - 39368454
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcggg 117  Q
    |||| |||| ||||||||||||||||||||| |||| ||| |||||||||||||| |||||||| |||||| ||||| | |||||||| |||||| ||||    
T  39368744 caacttgcatcaccaccacctgaatagaccggcgcacaccccaaccctcagctaggcaaccacacaccaccgcgatccttacgacgac-aacgatccggg 39368646  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacac 217  Q
    ||||||||||   ||||||||||||| ||||||||||| |||  |  |||||| ||||||||| |||| ||||||||||||||| |||||||||||||||    
T  39368645 agttgcgaag---gaggattaatcgtgaaggacctgcacccgccgaaaactgagcagtcaggacggctaaaggtgcaacaaacg-ctactccgtcaacac 39368550  T
Q  218 gaaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcaggatgccactagcggcaatgcttcgaagg 314  Q
    ||| |||||||||||||| ||||||| |||||||| ||||||||||||||| ||| |||| |||||||||| ||| | | |||||| ||| ||||||    
T  39368549 gaagcatctgcacacctagctctttcaagcaacaacagccaagcaaccaaaacct-aatcaaagagcaggaggcctccaacggcaaggctccgaagg 39368454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 25341395 - 25341147
Alignment:
Q  36 acctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcgggagttgcgaagaaggagg 134  Q
    |||||||||||||| | || ||| |||||  | |||| |||||||||||| ||||||||| | ||||| ||||||||| |   | |||||||||||||||    
T  25341395 acctgaatagaccggcccacaccacaaccaccggctaaacaaccacaaacaaccacgatccttacgaccacgaacgatccaaaaattgcgaagaaggagg 25341296  T
Q  135 attaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacacgaaacatctgcacacct 234  Q
    ||||||||| |||||||||||| |  | ||||| ||   ||||  |||||||||||| | |||||||||||||||||||| ||||| ||||||||||||     
T  25341295 attaatcgtgaaggacctgcagtcactagcaacagagtggtcataaaggcttaaggtacgacaaacgactactccgtcaatacgaagcatctgcacaccc 25341196  T
Q  235 aactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagag 283  Q
    | |||||||||||||||| | ||||||||||||||| ||||||| ||||    
T  25341195 agctctttcgagcaacaacaaccaagcaaccaaatcttaaatcctagag 25341147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 29685286 - 29685225
Alignment:
Q  343 cgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgacccta 404  Q
    ||||| ||||||||||| ||||||||||| |||| ||||||||||| ||||| |||||||||    
T  29685286 cgaccttgagaagaaagcgaaccaccaaatggctaagggagatctaaacagcttcgacccta 29685225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 39368404 - 39368335
Alignment:
Q  343 cgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 412  Q
    ||||||||||  ||||||||||||||||||||||||||  |||||||| | ||||||||| | |||||||    
T  39368404 cgaccctgaggcgaaagtgaaccaccaaaaggctgaggaggatctagaaaacctcgacccaagacccttg 39368335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 39368263 - 39368215
Alignment:
Q  361 gaaccaccaaaaggctgagggagatctagacagcctcgaccctataccc 409  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  39368263 gaaccaccaagaggctgagggagatctaaacagcctcgaccctagaccc 39368215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 1e-50; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 4391430 - 4391248
Alignment:
Q  29 caccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaa-ccaccacgatcat-acgacgacgaacgattcgggagttgcgaa 126  Q
    ||||||||||||||||||||| ||||  || ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| | |||||||||||    
T  4391430 caccaccacctgaatagaccggcgcacgccccaaccctcagctagacaaccacaaaaccaccacgatccttacgacgacgaacgatccaggagttgcgaa 4391331  T
Q  127 gaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactcc 209  Q
    ||||||||||||||||| ||||| |||||||||  | ||||||| | |||| ||||||||||| |||||||||||||||||||    
T  4391330 gaaggaggattaatcgtgaaggatctgcagccgccgacaactgagcggtcatgaaggcttaagttgcaacaaacgactactcc 4391248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 38709783 - 38709645
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcggg 117  Q
    ||||||||  ||||||||||||||||||||  | || ||| || ||||| ||||| |||| |||||||||||||||| | || |||||||| ||| ||||    
T  38709783 caacctgcgtcaccaccacctgaatagaccagcacacaccccagccctcggctaggcaactacaaaccaccacgatccttacaacgacgaatgatccggg 38709684  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcag 156  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  38709683 agttgcgaagaaggaggtttaatcgtgaaggacctgcag 38709645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 15209647 - 15209716
Alignment:
Q  145 aaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaa 214  Q
    ||||||||||| |||  | ||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  15209647 aaggacctgcacccgccgacaactgagcaggcaggaaggcttaagatgcaacaaacgactactccgtcaa 15209716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 38709512 - 38709454
Alignment:
Q  343 cgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgacc 401  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||| | | ||||||||    
T  38709512 cgactctgagaagaaagtgaaccaccaaaaggttgagggagatctataaaacctcgacc 38709454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 4391162 - 4391101
Alignment:
Q  343 cgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgacccta 404  Q
    ||||||||||| | ||||||| ||||||||||||  |||||||||||| |||||||||||||    
T  4391162 cgaccctgagacggaagtgaaacaccaaaaggctaggggagatctagaaagcctcgacccta 4391101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 38709379 - 38709336
Alignment:
Q  361 gaaccaccaaaaggctgagggagatctagacagcctcgacccta 404  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  38709379 gaaccaccaagaggctgagggagatctaaacagcctcgacccta 38709336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 38709638 - 38709574
Alignment:
Q  237 ctctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcaggatgccactagcggca 302  Q
    |||||||||||||||| | ||||||||||||| |||||| |||||||||||| ||| | |||||||    
T  38709638 ctctttcgagcaacaacaaccaagcaaccaaaacctaaa-ccaagagcaggaggcctccagcggca 38709574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 545
Target Start/End: Complemental strand, 4390949 - 4390906
Alignment:
Q  502 agggagaccttaaacaacttcgaccctagtcctttgacagaaca 545  Q
    |||||||||||||||||||||||||||||||  |||||| ||||    
T  4390949 agggagaccttaaacaacttcgaccctagtctcttgacataaca 4390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 6e-46; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 1578967 - 1578702
Alignment:
Q  23 ctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcat-acgacgacgaacgattcgggagtt 121  Q
    ||||| || ||||||| ||||  |||| ||||  || |||||||| |||| ||| ||||||||||||| |||| | ||||||||||||||| ||  ||||    
T  1578967 ctgcatcagcaccacccgaattaaccggcgcacgccccaaccctcggctaaacagccacaaaccaccatgatccttacgacgacgaacgatccgaaagtt 1578868  T
Q  122 gcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactccgtcaacacgaaa 221  Q
    |||||||||| ||||||||||| ||||| |  || |||  | |||| ||    ||||||||||||||||||||||||||||||||||||| ||||||||     
T  1578867 gcgaagaagggggattaatcgtgaaggatcaacaaccgccgacaaccgagtgatcaggaaggcttaaggtgcaacaaacgactactccgtaaacacgaag 1578768  T
Q  222 catctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagagcagga 288  Q
    |||||||| ||||| |||||||||||||||| | ||||||||||||| || ||||||| ||||||||    
T  1578767 catctgcaaacctagctctttcgagcaacaacaaccaagcaaccaaaacc-aaatccaggagcagga 1578702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 38387743 - 38387559
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgatcatacga-cgacgaacgattcggg 117  Q
    |||||||||| |||||||||| ||||||||| |||| ||| |||||||| |||||||||||| ||||||  |||||| |   | ||||||||||| | ||    
T  38387743 caacctgcaagaccaccacctaaatagaccggcgcacaccccaaccctcggctagacaaccataaaccattacgatccttgaaacgacgaacgatccagg 38387644  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacga 202  Q
    ||||||||||||||| |||||||||| |||||| |||   || || ||||||| || ||||||||||||||| | || |||||||    
T  38387643 agttgcgaagaaggatgattaatcgtgaaggacttgcgttcgctgacaactgagcaatcaggaaggcttaagttacatcaaacga 38387559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 8044735 - 8044838
Alignment:
Q  184 cttaaggtgcaacaaacgactactccgtcaacacgaaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatccaagag 283  Q
    |||||||||||||||| |||||||| ||| ||||||| |||||||| ||||||||||||||||||| |  ||||||||||||||||||| || |||||||    
T  8044735 cttaaggtgcaacaaatgactactctgtctacacgaagcatctgcaaacctaactctttcgagcaatatcagccaagcaaccaaatcct-aacccaagag 8044833  T
Q  284 cagga 288  Q
    |||||    
T  8044834 cagga 8044838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 8044915 - 8044982
Alignment:
Q  345 accctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 412  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||    
T  8044915 accctgagaagaaagtgaaccaccaaaaggttgagggagatctaggaagcctcgaccctagacccttg 8044982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 1578226 - 1578165
Alignment:
Q  343 cgaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgacccta 404  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  1578226 cgaccctaagaagaaattgaaccaccaaaaggctgagggagatctaaccagcctcgacccta 1578165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 38387554 - 38387481
Alignment:
Q  175 tcaggaaggcttaaggtgcaacaaacgactactccgtcaacacgaaacatctgcacacctaactctttcgagca 248  Q
    ||||||||||||||  | || |||||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  38387554 tcaggaaggcttaaattacatcaaacgactactccgtcaacacaaaacatctacacatctaactctttcgagca 38387481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 4e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 4397679 - 4397869
Alignment:
Q  19 caacctgcaacaccaccacctgaatagaccgacgcaaacctcaaccctcagctagacaaccacaaaccaccacgat-catacgacgacgaacgattcggg 117  Q
    ||||||||| |||||||||| ||| |||||| |||| ||| |||||||| |||||||||||||||||||||| ||| | ||||||||||| |||| | ||    
T  4397679 caacctgcatcaccaccaccagaaaagaccggcgcacaccccaaccctcggctagacaaccacaaaccaccatgatccttacgacgacgaccgatccagg 4397778  T
Q  118 agttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgaccagtcaggaaggcttaaggtgcaacaaacgactactc 208  Q
    ||||| |||||||||||||||||||| |||||| |||| |||   |||||  | |||||||||||||||||||||||||||| || |||||    
T  4397779 agttgtgaagaaggaggattaatcgtgaaggacatgcatccgccagcaacaaagcagtcaggaaggcttaaggtgcaacaaatgagtactc 4397869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 42049029 - 42049135
Alignment:
Q  72 agacaaccacaaaccaccacgatcat-acgacgacgaacgattcgggagttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactga 170  Q
    |||||||||||||||||||||||| | ||||||| ||||||| ||| |||| ||||||||||||||||||||| |||||| ||||| ||  | |||||||    
T  42049029 agacaaccacaaaccaccacgatccttacgacgaggaacgatccggaagttacgaagaaggaggattaatcgtgaaggacttgcagtcgccgacaactga 42049128  T
Q  171 ccagtca 177  Q
     ||||||    
T  42049129 gcagtca 42049135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 2569951 - 2569829
Alignment:
Q  180 aaggcttaaggtgcaacaaacgactactccgtcaacacgaaacatctgcacacctaactctttcgagcaacaatagccaagcaaccaaatcctaaatcca 279  Q
    ||||||||||||||||||||| |||||| ||||||||||||  ||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||    
T  2569951 aaggcttaaggtgcaacaaacaactacttcgtcaacacgaagtatcagcacacctagctctttcgagcaacaatagccaagtaaccaaatcat-aatcca 2569853  T
Q  280 agagcaggatgccactagcggcaa 303  Q
    ||||||||| ||| | ||||||||    
T  2569852 agagcaggaggcctccagcggcaa 2569829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 2569767 - 2569699
Alignment:
Q  344 gaccctgagaagaaagtgaaccaccaaaaggctgagggagatctagacagcctcgaccctatacccttg 412  Q
    |||||| ||||||||| ||||||||||||| |||| ||||||||||| ||||| |||| || |||||||    
T  2569767 gaccctaagaagaaagagaaccaccaaaagactgaaggagatctagatagccttgaccttagacccttg 2569699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 17803376 - 17803477
Alignment:
Q  74 acaaccacaaa-ccaccacgatcat-acgacgacgaacgattcgggagttgcgaagaaggaggattaatcgttaaggacctgcagccgttggcaactgac 171  Q
    ||||||||||| ||||||||||| | |||||||| |||||| ||| ||||||||||   ||||||||||||| ||||| |||||||||  |||||||||     
T  17803376 acaaccacaaaaccaccacgatccttacgacgac-aacgatccggaagttgcgaag---gaggattaatcgtgaaggaactgcagccgcgggcaactgag 17803471  T
Q  172 cagtca 177  Q
    ||||||    
T  17803472 cagtca 17803477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 409
Target Start/End: Complemental strand, 2569625 - 2569578
Alignment:
Q  362 aaccaccaaaaggctgagggagatctagacagcctcgaccctataccc 409  Q
    ||||||||| ||||||||||||||||| |||| |||||||||| ||||    
T  2569625 aaccaccaagaggctgagggagatctaaacagtctcgaccctagaccc 2569578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 31303625 - 31303555
Alignment:
Q  74 acaaccacaaaccaccacgatcat-acgacgacgaacgattcgggagttgcgaagaaggaggattaatcgt 143  Q
    |||||||||||||| || |||| | || |||||||||||||||  |||||||  |||||||||||||||||    
T  31303625 acaaccacaaaccatcatgatccttacaacgacgaacgattcgaaagttgcgttgaaggaggattaatcgt 31303555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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