View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_10 (Length: 307)
Name: NF6771_low_10
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 51511159 - 51511460
Alignment:
| Q |
1 |
tatatatacaataaaatatctatctagtttagagttcgatcctgatcagtgcgtacaacaaaaaacgtacgttgaaagaggtcaactacttaaacataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511159 |
tatatatacaataaaatatctatctagtttagagttcgatcctgatcagtgcgtacaacaaaaaacgtacgttgaaagaggtcaactacttaaacataca |
51511258 |
T |
|
| Q |
101 |
tccgttacattgagcgattaatctctatagttgaacgtgcagataccttaatttaccataaacttaatatgtacctagtaattaatatcaagaaaggagg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511259 |
tctgttacattgagcgattaatctctatagttgaacgtgtagataccttaatttaccataaacttaatatgtacctagtaattaatatcaagaaaggagg |
51511358 |
T |
|
| Q |
201 |
aaagaattgtacctctggttgtttgatgccaaggatgagaccacaaggcgacaagtcttgtgaaatttcacaaccaacttcttcatagagagcatcatga |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511359 |
aaagaattgtacatctggttgtttgatgccaaggatgagaccacaaggcgacaagtcttgtgaaatttcacaaccaacttcttcatagagagcatcatga |
51511458 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
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|| |
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|
| T |
51511459 |
tg |
51511460 |
T |
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