View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_12 (Length: 301)
Name: NF6771_low_12
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 14002166 - 14002448
Alignment:
| Q |
1 |
gtgcagattctaccctgttattgattgattgtgctttaagtgcaacccaaccagccttatttcttccacgtaaagcagaattttcaattaattttggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002166 |
gtgcagattctaccctgttattgattgattgtgctttaagtgcaacccaaccagccttatttcttccacgtaaagcagaattttcaattaattttggaaa |
14002265 |
T |
|
| Q |
101 |
attaattgtgtctcctcgttatcataatatcatctatgcaaagtgaaatctatgctaatccagtatgagctatttgatgtctaattttgtaggatctaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002266 |
attaattgtgtctcctcgttatcataatatcatctatgcaaagtgaaatctatgctaatccagtatgagctatttgatgtctaattttgtaggatctaac |
14002365 |
T |
|
| Q |
201 |
tgaaacatctcttactgtcacattttctctaagcaccttatgttgtgtcctattccttacgtagtgtcacacaggtcccatct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002366 |
tgaaacatctcttactgtcacattttctctaagcaccttatgttgtgtcctattccttacgtagtgtcacacaggtcccatct |
14002448 |
T |
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