View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_14 (Length: 268)
Name: NF6771_low_14
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 44651931 - 44652172
Alignment:
| Q |
14 |
acatcaataattaatggtggcgattattatcaagaatataatttcatttttctacttttagcagcattagtgacctacttagcttataatttaagctaac |
113 |
Q |
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| T |
44651931 |
acattaataattaatggttgcgattattatcaagaatataatttcatttttctacttttagcagcattagtgacctacttagcttataatttaagctaac |
44652030 |
T |
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| Q |
114 |
tgtggaagaaagaactcttccaagtcaggtttaatttgaggtgacaattctcatgattttccctgtattttcttgtatcatt----nnnnnnnnntttct |
209 |
Q |
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| T |
44652031 |
tgtggaagaaagaactcttccaagtcaggtttaatttgaggtgacaattctcatgattttccctgtattttcttgtatcattaaaaaaatatatatatct |
44652130 |
T |
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| Q |
210 |
tttttgtgaatcaatatatagaatttgttttcacgatcatac |
251 |
Q |
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| T |
44652131 |
tttttgtgaatcaatatatagaatttgttttcacgatcatac |
44652172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 44680761 - 44680932
Alignment:
| Q |
19 |
aataattaatggtggcgattattatcaagaatataatttcatttttctacttttagcagcattagtgacctacttagcttataatttaagctaactgtgg |
118 |
Q |
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| T |
44680761 |
aataattaatagtggcgattaatatcaagaatacaatgtc-tttttctacttttagcagcattggtgaattacttagcttataatttaagctaactgtgg |
44680859 |
T |
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| Q |
119 |
aagaaagaactcttccaagtcaggtttaatttgaggtgacaattctcatgattttccctgtattttcttgtatcatt |
195 |
Q |
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| T |
44680860 |
aaga----actcttccaagtcagctttactttgaggtgacaattctcatgattttccctgtattttcttgtatcatt |
44680932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 44630496 - 44630626
Alignment:
| Q |
20 |
ataattaatggtggcgattattatcaagaatataatttcatttttctacttttagcagcattagtgacctacttagcttataatttaagctaactgtgga |
119 |
Q |
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| T |
44630496 |
ataattaatagtggcgattaatatcaagattattaagtc-tttttctacttttagcatcattagtgagctagttagcttataattcaagctaactgtgga |
44630594 |
T |
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| Q |
120 |
agaaagaactcttccaagtcaggtttaatttg |
151 |
Q |
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| T |
44630595 |
agaaacaacttttccaagtcagctttgatttg |
44630626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 44630644 - 44630694
Alignment:
| Q |
144 |
ttaatttgaggtgacaattctcatgattttccctgtattttcttgtatcat |
194 |
Q |
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| T |
44630644 |
ttaatttgaggtgacaattctgatgattttctccgtattttcttgtatcat |
44630694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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