View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_17 (Length: 249)
Name: NF6771_low_17
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_17 |
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| [»] scaffold1407 (2 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 34657341 - 34657201
Alignment:
| Q |
99 |
acttaattcaaaattgcaattaacaaaggttcagtaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcaataaaaataaagcag |
198 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34657341 |
acttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcaataaaaat-aagcag |
34657243 |
T |
|
| Q |
199 |
tttctaaataacacaatttctctctaaaaagcttgatgtcca |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34657242 |
tttctaaataacacaatttctctctaaaaagcttggtgtcca |
34657201 |
T |
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Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 11164351 - 11164215
Alignment:
| Q |
95 |
agttacttaattcaaaattgcaattaacaaaggttcagtaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcaataaaaataaa |
194 |
Q |
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||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11164351 |
agttacttaattcaaaattgcaattaagaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagcaat-------aa |
11164259 |
T |
|
| Q |
195 |
gcagtttctaaataacacaatttctctctaaaaagcttgatgtc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11164258 |
tcagtttctaaataacacaatttctctctaaaaagcttggtgtc |
11164215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 15932913 - 15932825
Alignment:
| Q |
95 |
agttacttaattcaaaattgcaattaacaaaggttcagtaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagca |
183 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932913 |
agttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagca |
15932825 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 15941255 - 15941167
Alignment:
| Q |
95 |
agttacttaattcaaaattgcaattaacaaaggttcagtaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagca |
183 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941255 |
agttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaattacgataagca |
15941167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 15932829 - 15932784
Alignment:
| Q |
193 |
aagcagtttctaaataacacaatttctctctaaaaagcttgatgtc |
238 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
15932829 |
aagcagtttctaaataacacagtttctctctaaaaagcttggtgtc |
15932784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 15941171 - 15941126
Alignment:
| Q |
193 |
aagcagtttctaaataacacaatttctctctaaaaagcttgatgtc |
238 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
15941171 |
aagcagtttctaaataacacagtttctctctaaaaagcttggtgtc |
15941126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 7157820 - 7157780
Alignment:
| Q |
200 |
ttctaaataacacaatttctctctaaaaagcttgatgtcca |
240 |
Q |
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|||||||||||| ||||||||||| ||||||||| |||||| |
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| T |
7157820 |
ttctaaataacaaaatttctctctgaaaagcttggtgtcca |
7157780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 1239 - 1307
Alignment:
| Q |
108 |
aaaattgcaattaacaaaggttcagtaattgtaa-aattgtacgatagctaaacaaaagcttaaattac |
175 |
Q |
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|||||||||||| |||||||||| | | |||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
1239 |
aaaattgcaattcacaaaggttctgaagttgtaagaattgtatgatagctaaacaaaagcttgaattac |
1307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 1310 - 1350
Alignment:
| Q |
193 |
aagcagtttctaaataacacaatttctctctaaaaagcttg |
233 |
Q |
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| T |
1310 |
aagcagtttctaaataacacagtttctctctaaaaagcttg |
1350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 77049 - 77089
Alignment:
| Q |
193 |
aagcagtttctaaataacacaatttctctctaaaaagcttg |
233 |
Q |
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|||||| |||||||||||| ||||||||||| ||||||||| |
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| T |
77049 |
aagcagattctaaataacaaaatttctctctgaaaagcttg |
77089 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 24072962 - 24072926
Alignment:
| Q |
199 |
tttctaaataacacaatttctctctaaaaagcttgat |
235 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
24072962 |
tttctaaataactgaatttctctctaaaaagcttgat |
24072926 |
T |
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