View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_18 (Length: 249)
Name: NF6771_low_18
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38175232 - 38175002
Alignment:
| Q |
1 |
tgacacaatctaatttaacaccatcacacgaagaagtgtcttcagaagaaacaccaacaaccttaatttcctcaaatgacaaggaatcattgatagcaac |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38175232 |
tgacacaatctaatttaacaccatcatacgaagaagtgtcttcagaagaaacaccaacaaccttaatttcctcaaatgacaaggaatcattgacagcaac |
38175133 |
T |
|
| Q |
101 |
cttatgcttcattgcgtattcaagaaacaaaagctcgaatgctgaaacagtgattccaacagtgagtttctcaaaactcgcaattgaagcgataattaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38175132 |
cttatgcttcattgcgtattcaagaaacaaaagcacgaatgctgaaacagtgattccaacagtgagtttctcaaaactcgcaattgaagcgataattaca |
38175033 |
T |
|
| Q |
201 |
aacatcatcagaaaaataccaagtgccaatt |
231 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
38175032 |
aacatcatcagaaaaataccaagtaccaatt |
38175002 |
T |
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