View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_2 (Length: 549)
Name: NF6771_low_2
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 549
Target Start/End: Complemental strand, 11341576 - 11341049
Alignment:
| Q |
19 |
acaaatgaaactaaaacaaagacggcacgacacatacatcagccctgaaccacctcagcgagcaaaacactccctcagattccaaaaaaccttttttgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11341576 |
acaaatgaaactaaaacaaagacggcacgacacatacatcagccctgaaccacctcagcgagcaaaacactccctcagattccaaaaaaccttttttgaa |
11341477 |
T |
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| Q |
119 |
tagacatagtgatcctaatgccaaatatacatggtggatattatgcttgatctaattttgtttaccctagttcaagcacatccatgttgattttgatagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11341476 |
tagacatagtgatcctaatgccaaatatacatggtggatattatgcttgatctaattttgtttaccctagttcaagcacatccatgttgattttgatagt |
11341377 |
T |
|
| Q |
219 |
gagaactattttattcgtacacttaacgatattgatattgcaatagaatctatttttaaatgacacaaccatggtattattatagtcagttcaacaggct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
11341376 |
gagaactattttattcgtacacttaacgatattgatattgcaatagaatctatttttaaatgacacaaccatggta---ttatagtcagtacaacaggct |
11341280 |
T |
|
| Q |
319 |
cagattaatggcatcatggttgaatgctgctataattccttctttttatgttttgttgaatgtatatatttggattataggtatgcagctccaactccaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11341279 |
cagattaatggcatcatggttgaatgctgctatatttccttctttttatgttttgttgaatgtatatatttggattataggtatgcagctccaactccaa |
11341180 |
T |
|
| Q |
419 |
gcacattggctgcacatggaaatatggtaggaaaatctatcctgaatgaggactaaattgaaattggagagttacttgaatatagagtggaagaatcatt |
518 |
Q |
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| T |
11341179 |
gcacattggctgcacatggaagtatggtaggaaaatctatcttgaatgaggactaaagtgaaattggagagttacttaaatatagagtggaagaatcatt |
11341080 |
T |
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| Q |
519 |
tgttggattttgattatgtactatgaaattg |
549 |
Q |
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| T |
11341079 |
tgttagattttgattatgtactatgaaattg |
11341049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 155 - 356
Target Start/End: Complemental strand, 11357109 - 11356913
Alignment:
| Q |
155 |
gatattatgcttgatctaattttgtttaccctagttcaagcacatccatgttgattttgatagtgagaactattttat-tcgtacacttaacgatattga |
253 |
Q |
| |
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|||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| || ||| |||||||| |
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| T |
11357109 |
gatattattcttgatctaattttatttaacctagttcaggcacatccatgttgattttgatagtgagaactattttatcttgtatacctaatgatattga |
11357010 |
T |
|
| Q |
254 |
tattgcaatagaatctatttttaaatgacacaaccatggtattattatagtcagttcaacaggctcagattaatggcatcatggttgaatgctgctataa |
353 |
Q |
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| T |
11357009 |
tattgcaatagaatctattttttaatgacacaacc------ctagtatagccattataacaggcttagattcatggcatcatggttgaatgcttctacaa |
11356916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 21531251 - 21531162
Alignment:
| Q |
179 |
tttaccctagttcaagcacatccatgttgattttgatagtgagaactattttattcgtacacttaacgatattgatattgcaatagaatc |
268 |
Q |
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| T |
21531251 |
tttaccttagttccagaatatccatgttgattttgaaagtgagaatcattttatttgtatacttgatgatattgatattgaaataaaatc |
21531162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 24022611 - 24022660
Alignment:
| Q |
246 |
gatattgatattgcaatagaatctatttttaaatgacacaaccatggtat |
295 |
Q |
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| T |
24022611 |
gatattgatattgcaatagaatctattgtttaatgacacaaccgtggtat |
24022660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 21526876 - 21526764
Alignment:
| Q |
156 |
atattatgcttgatctaattttgtttaccctagttcaagcacatccatgttgattttgatagtgagaactattttattcgtacacttaacgatattgata |
255 |
Q |
| |
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||||||| ||||||||| | | |||| |||||||| || | ||||||||| ||||||| ||| |||| |||||||| ||| || | | |||||||||| |
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| T |
21526876 |
atattattcttgatctagtcgtatttatcctagttccagaatatccatgttaattttgaaagtaagaatcattttatttgtatacctgatgatattgata |
21526777 |
T |
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| Q |
256 |
ttgcaatagaatc |
268 |
Q |
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||| |||| |||| |
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| T |
21526776 |
ttgaaataaaatc |
21526764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 33570091 - 33570212
Alignment:
| Q |
156 |
atattatgcttgatctaattttgtttaccctagttcaagcacatccatgttgattttgatagtgagaactattttattcgtacacttaacgatattgata |
255 |
Q |
| |
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||||||| |||| ||||||||| || |||| |||||||| |||||| || | ||||||| ||||| || | |||||| ||| || | | |||| ||||| |
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| T |
33570091 |
atattattcttggtctaattttattgaccccagttcaagtacatccctgctaattttgaaagtgaaaataaatttatttgtataccttatgataatgata |
33570190 |
T |
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| Q |
256 |
ttgcaatagaatctatttttaa |
277 |
Q |
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|||||||| | ||||||||||| |
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| T |
33570191 |
ttgcaatatagtctatttttaa |
33570212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 36340861 - 36340967
Alignment:
| Q |
171 |
taattttgtttaccctagttcaagcacatccatgttgattttgatagtgagaactattttattcgtacacttaacgatattgatattgcaatagaatcta |
270 |
Q |
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||||||| ||||||| | ||||||||||||| || | ||||||| ||| ||| | ||||||| ||| || | |||| |||||||||||||||||||| |
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| T |
36340861 |
taattttatttaccccaattcaagcacatccctgctaattttgaacgtgtgaattgttttatttgtattctggatgataatgatattgcaatagaatcta |
36340960 |
T |
|
| Q |
271 |
tttttaa |
277 |
Q |
| |
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|||||| |
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| T |
36340961 |
cttttaa |
36340967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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