View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_21 (Length: 239)
Name: NF6771_low_21
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 1777660 - 1777459
Alignment:
| Q |
20 |
catggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatac |
119 |
Q |
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| T |
1777660 |
catggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatac |
1777561 |
T |
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| Q |
120 |
aggttcaagagattcattcatcaatttcaaaatattatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgattcttgtgggtca |
219 |
Q |
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| T |
1777560 |
aggttcaagagattcattcatcaatttcaaaatatcatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgattcttgtgggtca |
1777461 |
T |
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| Q |
220 |
ta |
221 |
Q |
| |
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|| |
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| T |
1777460 |
ta |
1777459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 1801704 - 1801506
Alignment:
| Q |
20 |
catggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatac |
119 |
Q |
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| T |
1801704 |
catggtgcatggtgttggtataaggttgcaactatgcttaaattagctggtcataatgttacaactattgacttggctgcttgtggtatcagtccaatcc |
1801605 |
T |
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| Q |
120 |
aggttcaagagattcattcatcaatttcaaaatattatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgattcttgtgggtca |
219 |
Q |
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| T |
1801604 |
aggttcaagagattcat---tcaatttcacaatattatgaacctttcatgacatttatggaatctcttcctccaaaggagaaggtgattcttgtgggtca |
1801508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 1784894 - 1784696
Alignment:
| Q |
20 |
catggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatac |
119 |
Q |
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||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||||||||| || ||||| ||||||||| ||||||| |||||||| |
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| T |
1784894 |
catggtgaatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatac |
1784795 |
T |
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| Q |
120 |
aggttcaagagattcattcatcaatttcaaaatattatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgattcttgtgggtca |
219 |
Q |
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| T |
1784794 |
aagttcaagagattcat---tcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctccaaaggagaaggtgattcttgtgggtca |
1784698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 1772694 - 1772496
Alignment:
| Q |
20 |
catggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatac |
119 |
Q |
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|||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||| |
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| T |
1772694 |
catggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttacaactattgaattggctgcttcaggtatcaatccaatac |
1772595 |
T |
|
| Q |
120 |
aggttcaagagattcattcatcaatttcaaaatattatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgattcttgtgggtca |
219 |
Q |
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| T |
1772594 |
aagtccaagagattcat---tcaatttcaaaatattatgaacccttgatgacatttatggaatctcttcctccaaatgagaaggtaattcttgttggtca |
1772498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 1769023 - 1768817
Alignment:
| Q |
20 |
catggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatac |
119 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||| || || || | || ||||||||||||||| || ||||| | |
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| T |
1769023 |
catggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagc |
1768924 |
T |
|
| Q |
120 |
aggttcaagagattcattcatcaatttcaaaatattatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgattcttgtgggtca |
219 |
Q |
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|| | |||||| ||||| |||||||| |||| || |||||||||| ||||||| || || ||||||| |||| || ||| ||||||| ||||| |
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| T |
1768923 |
agatgcaagaggttcat---tcaatttctgaataccatcaacctttgatgacatttatggagtcacttcctcttgaggagaaagtggttcttgttggtca |
1768827 |
T |
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| Q |
220 |
tattcttgga |
229 |
Q |
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|| ||||||| |
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| T |
1768826 |
tagtcttgga |
1768817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 33760532 - 33760500
Alignment:
| Q |
197 |
gaaaaggtgattcttgtgggtcatattcttgga |
229 |
Q |
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| T |
33760532 |
gaaaaggtgattcttgtgggtcatagtcttgga |
33760500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 25727554 - 25727752
Alignment:
| Q |
20 |
catggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatac |
119 |
Q |
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||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |
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| T |
25727554 |
catggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataatgttacaactattgaattggctggttgtggtatcagtccaatac |
25727653 |
T |
|
| Q |
120 |
aggttcaagagattcattcatcaatttcaaaatattatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgattcttgtgggtca |
219 |
Q |
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| T |
25727654 |
aggttcaagagattcat---tcaatttcacaatattatgaaccttttatgacatttatggaatctcttcctccaaaggagaaggtgattcttgtgggtca |
25727750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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