View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6771_low_4 (Length: 510)

Name: NF6771_low_4
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6771_low_4
NF6771_low_4
[»] chr5 (2 HSPs)
chr5 (65-510)||(39184666-39185113)
chr5 (66-277)||(8730292-8730501)
[»] chr1 (4 HSPs)
chr1 (73-288)||(42373538-42373752)
chr1 (65-420)||(17032737-17033100)
chr1 (66-292)||(19597952-19598180)
chr1 (222-290)||(41919898-41919966)
[»] chr2 (4 HSPs)
chr2 (66-277)||(25505406-25505615)
chr2 (66-282)||(22885907-22886124)
chr2 (171-297)||(31902910-31903036)
chr2 (171-326)||(39339357-39339512)
[»] chr4 (4 HSPs)
chr4 (179-296)||(16501182-16501300)
chr4 (80-282)||(46699364-46699566)
chr4 (222-290)||(30963879-30963947)
chr4 (110-165)||(12295557-12295612)
[»] chr7 (6 HSPs)
chr7 (130-290)||(37792747-37792908)
chr7 (228-290)||(38484991-38485053)
chr7 (171-326)||(47326396-47326551)
chr7 (228-297)||(3420242-3420311)
chr7 (179-282)||(12480298-12480402)
chr7 (222-290)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (67-254)||(25595029-25595217)
chr3 (117-282)||(5555991-5556158)
chr3 (171-292)||(17501759-17501880)
chr3 (181-279)||(1653452-1653550)
[»] chr8 (4 HSPs)
chr8 (143-295)||(9519052-9519205)
chr8 (228-290)||(34866640-34866702)
chr8 (203-282)||(10551752-10551832)
chr8 (222-290)||(34389590-34389658)
[»] chr6 (1 HSPs)
chr6 (179-290)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 65 - 510
Target Start/End: Original strand, 39184666 - 39185113
Alignment:
Q  65 acaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 164  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39184666 acaagacaacaaagttgaaagacttcaaggaaagcggccacaacgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 39184765  T
Q  165 gccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacga 264  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  39184766 gccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacgaaacacaactacaaaacataggcaacga 39184865  T
Q  265 cgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaacaaccaaccccattaa 364  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  39184866 cgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtcgccggagtaaacaaccaaccccatgaa 39184965  T
Q  365 cctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagtaccaaacctgaaagcatgtgagacacccagagnnnnnnngtcga 464  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||       |||||    
T  39184966 cctgcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaaccagtaccgaacgtgaaagcacgtgagacacccagag-aaaaaagtcga 39185064  T
Q  465 tatatacccaaaaccgc---caaacaaccaagcaaccagcaccactacc 510  Q
    |||||||| |||||| |    ||| ||||||||||||||||||||||||    
T  39185065 tatatacctaaaaccacaaaaaaaaaaccaagcaaccagcaccactacc 39185113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 8730501 - 8730292
Alignment:
Q  66 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 165  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  8730501 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 8730402  T
Q  166 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 265  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  8730401 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 8730304  T
Q  266 gccagtttgaag 277  Q
    |||||| |||||    
T  8730303 gccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 73 - 288
Target Start/End: Complemental strand, 42373752 - 42373538
Alignment:
Q  73 acaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaac 172  Q
    ||||||||||| | ||||||||||| | || ||| ||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||| ||||||    
T  42373752 acaaagttgaaggtctccaaggaaatcagcaacatcgccatagcattccgaagaagcagccacagtgaatatacccacaa-ccaaagatagagacaaaac 42373654  T
Q  173 tacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtt 272  Q
    ||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||    
T  42373653 tacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaaacacaacttcaaaacacgggcaacgacaccggtt 42373554  T
Q  273 tgaagcggaatcacaa 288  Q
    ||||||||||||||||    
T  42373553 tgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 65 - 420
Target Start/End: Complemental strand, 17033100 - 17032737
Alignment:
Q  65 acaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 164  Q
    ||||||||||||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||  ||||| ||||||||  || |||||||    
T  17033100 acaagacaacaaagttgaaggtctctaaggaaagcagccacatcgccatagcattccgaagaagcagccacgttgaataaacccacaaatcagcgataga 17033001  T
Q  165 g-ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaagacgaaacacaactac-aaaacatgggc 259  Q
    | | |||||||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| ||||||||||||  |||| || ||||||  ||     
T  17033000 gacaaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaagacgaaatccaacaacaaaaacacaggt 17032901  T
Q  260 aacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaac---aaccaac 356  Q
    |  ||| || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |  |||| ||||||||||   ||||||     
T  17032900 agtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttccgtcgtcggagtaaacaaaaaccaag 17032801  T
Q  357 cccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagt 420  Q
     |||| |||||||  |||||||  |||||| ||| ||||||||||||| |  ||||||||||||    
T  17032800 tccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaacacaaccaaaaccagt 17032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 292
Target Start/End: Complemental strand, 19598180 - 19597952
Alignment:
Q  66 caagacaacaaagttgaaagactccaaggaaagcggcca-caccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 164  Q
    ||||||||| | ||| || | ||||||||||||| || | || | ||||||||||| |||||| || |||| |||||||||| ||||| ||| ||| |||    
T  19598180 caagacaacgaggtttaatgtctccaaggaaagcagcaaacatcaccatagcattctgaagaatcaaccacaaagaatatactcacaaaccatcgaaaga 19598081  T
Q  165 gccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaac 262  Q
    | ||||  ||||||  ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | ||||||| ||||| |||| ||| |||| |||||||    
T  19598080 gacaaaggctacgcctccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaac 19597982  T
Q  263 gacgccagtttgaagcggaatcacaaccta 292  Q
    |||||| || ||||| |||| |||||||||    
T  19597981 gacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  222 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 290  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 277
Target Start/End: Original strand, 25505406 - 25505615
Alignment:
Q  66 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 165  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  25505406 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 25505505  T
Q  166 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 265  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  25505506 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 25505603  T
Q  266 gccagtttgaag 277  Q
    |||||| |||||    
T  25505604 gccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 282
Target Start/End: Original strand, 22885907 - 22886124
Alignment:
Q  66 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 165  Q
    |||||||||||  ||||||| ||| ||||||||| |  ||| |||| ||||||| ||||||||||||||| | |||||||||||||| | |  |||||||    
T  22885907 caagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaagcagccacaacgaatatacccacaaactagtgatagag 22886006  T
Q  166 cca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacg 263  Q
      | |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||    
T  22886007 atagaaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcg 22886105  T
Q  264 acgccagtttgaagcggaa 282  Q
    |||||||| ||||||||||    
T  22886106 acgccagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 297
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  171 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 269  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  270 gtttgaagcggaatcacaacctaaatca 297  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  171 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 269  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  270 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 326  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 296
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  179 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 277  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  278 cggaatcacaacctaaatc 296  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 80 - 282
Target Start/End: Original strand, 46699364 - 46699566
Alignment:
Q  80 tgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagcca-aaactacgct 178  Q
    |||||| ||| ||||||||| || ||| | ||||| ||||||||||||||||||| |  |||| ||||||||| ||| ||||| ||  | |||||||||     
T  46699364 tgaaagtctcgaaggaaagcagcaacatcaccataacattccgaagaagcagccatggtgaatttacccacaaaccagcgataaagatataaactacgcc 46699463  T
Q  179 gccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 278  Q
    |||||||| |||||||||| | |||| || ||||  || ||| ||| ||||||||| |||   |||| |||| ||| ||||| |||||||  ||||||||    
T  46699464 gccaaaccacctcaccaag-acacaggcatcaaccaaacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagc 46699562  T
Q  279 ggaa 282  Q
    ||||    
T  46699563 ggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  222 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 290  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 12295612 - 12295557
Alignment:
Q  110 ccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 165  Q
    ||||||||||| |||||||||||||||  |||||||||||||| ||| | ||||||    
T  12295612 ccatagcattctgaagaagcagccacggtgaatatacccacaaaccatcaatagag 12295557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 37792908 - 37792747
Alignment:
Q  130 agccacgaagaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctat 227  Q
    |||||||| ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| |     
T  37792908 agccacgatgaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaag 37792810  T
Q  228 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 290  Q
    || |||| ||||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792809 agaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  228 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 290  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  171 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 269  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  270 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 326  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  228 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 297  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  179 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 276  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  277 gcggaa 282  Q
    | ||||    
T  12480303 gtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  222 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 290  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 67 - 254
Target Start/End: Original strand, 25595029 - 25595217
Alignment:
Q  67 aagacaacaaagttgaaagactccaa-ggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 165  Q
    |||||| | ||| |||||| |||||| ||||||| || ||| |||||| || |||| || | |||||||||   || ||||||| || | | ||||||||    
T  25595029 aagacagcgaagatgaaagtctccaaaggaaagcagcaacatcgccattgccttccaaaaatgcagccacggttaaaatacccataaacgagcgatagag 25595128  T
Q  166 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 254  Q
     | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595129 acgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 282
Target Start/End: Complemental strand, 5556158 - 5555991
Alignment:
Q  117 attccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa 216  Q
    |||||||||||||| |||    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||    
T  5556158 attccgaagaagcaaccatagtgaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaa 5556059  T
Q  217 a-acatatcta-taggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 282  Q
    | ||||||||| |  ||||||||| | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556058 acacatatctattttgaagacgaagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  171 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 269  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  270 gtttgaagcggaatcacaaccta 292  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  181 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 278  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 295
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  143 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 240  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  241 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 295  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  228 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 290  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  203 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 282  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  222 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 290  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  179 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 277  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  278 cggaatcacaacc 290  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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