View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_6 (Length: 420)
Name: NF6771_low_6
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 9584162 - 9584570
Alignment:
| Q |
8 |
tggacatcaataactcaaacaatctactaaatctttttctaaggacaccccacctacccacacatccgac-aaaaataaaatttcaaccggtaaaatgtc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
9584162 |
tggacatcgataactcaaacaatctactaaatctttctctaaggacaccccacctacccacacatccgaccaaaaataaaatttcaactggtaaaatgtc |
9584261 |
T |
|
| Q |
107 |
aaagttgtt-----gaacatgatgatcgggattcgaactctgactttttaacttgtgtgtatgagtttctaatgacattagttgtttcgtttatt----- |
196 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
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| T |
9584262 |
aaagttgttaggttgaacatgatgatcgggattcgaactctgactttttaacttgtgcgtatgagtttctaatgacatttgttgttttgtttattaaaaa |
9584361 |
T |
|
| Q |
197 |
-nnnnnnnnnnttatttattagatgagtctcattaattacctttattttggtaaatcaaaaattcatttnnnnnnnnnntgactcatacatgaacatgag |
295 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
9584362 |
aaataaaataaatatttattagatgagtctcattaattatctttattttggtaaattaaaaattcattt---aaaaaaatgactcatacatgaacatgag |
9584458 |
T |
|
| Q |
296 |
ctccattcaagttattaagaagtatatactgtaattaatcgagttagaaaaataaagttgcacgattgacaattccacttgttgagtaggagaaagaaag |
395 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9584459 |
ctccattcaagttattaagaagtatataatgtaattaatcgagttagaaaaataaagttgcacgattgacaattccacttgttgagtaggagaaagaaag |
9584558 |
T |
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| Q |
396 |
-actccaattga |
406 |
Q |
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||||||||||| |
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| T |
9584559 |
tactccaattga |
9584570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 27100367 - 27100447
Alignment:
| Q |
8 |
tggacatcaataactcaaacaatctactaaatctttttct-aaggacaccccacctacccacacatccga-caaaaataaa |
86 |
Q |
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| T |
27100367 |
tggacatcgataactcaaacaatctactaaatctttctctaaaggacaccccaccaacccacgcatccgaccaaaaataaa |
27100447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 3927353 - 3927422
Alignment:
| Q |
19 |
aactcaaacaatctactaaatctttttctaa-ggacaccccacctacccacacatccga-caaaaataaa |
86 |
Q |
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| T |
3927353 |
aactcaaacaatctactaaatctatctctaagggacaccccgccaacccacacatccgaccaaaaataaa |
3927422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 42457024 - 42456970
Alignment:
| Q |
34 |
ctaaatctttttctaag-gacaccccacctacccacacatccga-caaaaataaa |
86 |
Q |
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|||||||||| |||||| ||||||||||| |||||||||||||| |||||||||| |
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|
| T |
42457024 |
ctaaatctttctctaagagacaccccaccaacccacacatccgaccaaaaataaa |
42456970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 8249235 - 8249304
Alignment:
| Q |
19 |
aactcaaacaatctactaaatctttttctaa-ggacaccccacctacccacacatccga-caaaaataaa |
86 |
Q |
| |
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|||||||||| |||||||||||||| ||| ||| |||||||| |||||||||||||| |||||||||| |
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| T |
8249235 |
aactcaaacagtctactaaatctttccttaaaggataccccacccacccacacatccgaccaaaaataaa |
8249304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 10303928 - 10303992
Alignment:
| Q |
19 |
aactcaaacaatctactaaatctttttctaag-gacaccccacctacccacacatccgacaaaaa |
82 |
Q |
| |
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||||||||||||||||| |||| || |||| ||||| ||||||||||||||||||||| |||| |
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| T |
10303928 |
aactcaaacaatctactgaatcgttccctaaaagacacaccacctacccacacatccgaccaaaa |
10303992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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