View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_low_7 (Length: 404)
Name: NF6771_low_7
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 48 - 395
Target Start/End: Original strand, 39753395 - 39753753
Alignment:
| Q |
48 |
cagcatctatagtctctttggtccccaattatctgaaattgcttttagaaagcgcaagacaagttccatcaaagaaagcacaagaaaatatacctattaa |
147 |
Q |
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| T |
39753395 |
cagcatctatagtctttttggtccccaattatctgaaattgcttttagaaagcacaagacaagttccatcaaagaaagcacaagaaaatatacctattaa |
39753494 |
T |
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| Q |
148 |
atttaaacctaagtagaat-nnnnnnntaaaactccattagcattaaataattgaactgaatccattacggtgtcctctttagacctcttcttattggca |
246 |
Q |
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| T |
39753495 |
atttaaacctaagtagaataaaaaaaataaaactccattagcattaaataattgaactgaatccattacggtgtcctctttagacctc-------tggca |
39753587 |
T |
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| Q |
247 |
acataaataaattaagaaggttcttatttgattactatatttactaactaacaaa-----------------atgtcatatgtattgtggcaggttcatt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39753588 |
acataaataaattaagaaggttcttatttgattactatatttactaactaacaaaatactttatgcattaacatgtcatatgtattgtggcaggttcatt |
39753687 |
T |
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| Q |
330 |
ctctcgaaccgctgttaattatgctgctggatgtgaaagtttaatatcaaacattgtgatgtccat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39753688 |
ctctcgaaccgctgttaattatgctgctggatgtgaaagtttaatatcaaacattgtgatggccat |
39753753 |
T |
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