View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6773_high_2 (Length: 303)

Name: NF6773_high_2
Description: NF6773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6773_high_2
NF6773_high_2
[»] chr7 (1 HSPs)
chr7 (1-288)||(5739122-5739419)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 5739122 - 5739419
Alignment:
Q  1 atccggttatctttgtactatcactctattttatactttgaaaccaattgagtgaccaagtatttgatagattacatgacaattcttttttaggggaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5739122 atccggttatctttgtactatcactctattttatactttgaaaccaattgagtgaccaagtatttgatagattacatgacaattcttttttaggggaaga 5739221  T
Q  101 aattcaaatcattccattagataaatagtgagagatataaggtggtacatcaataaacaatt----------gagttagtttttaatggattgtctgtcc 190  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||| ||||||||||    
T  5739222 aactcaaatcattccattagataaatagtgagagatataaggtggtacatcaataaacaattgagagattgagagttagtttttaatgggttgtctgtcc 5739321  T
Q  191 taaatcataagcgacctcaattgtttaccttcggttaaactcaaccaaagagttgttaaatgacaaacctaacaattgtatacgttgctaaataatga 288  Q
    ||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5739322 taactcataagcgacctcaattgcttgccttcggttaaactcaaccaaagagttgttaaatgacaaacctaacaattgtatacgttgttaaataatga 5739419  T

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