View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6773_low_10 (Length: 209)
Name: NF6773_low_10
Description: NF6773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6773_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 471629 - 471453
Alignment:
| Q |
17 |
aaaagtgtcacctctttctcattgcacataggaatctgaacaagtaccaaaggaaagccatggttggaaccttccaaatcatcttcaacatttccatcaa |
116 |
Q |
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| T |
471629 |
aaaagtgtcacctctttctcattgcacataggaatctgaacaagtaccagaggaaagccatggttggaaccttccaaatcatcttcaacatttccatcag |
471530 |
T |
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| Q |
117 |
caatcaaaggtttaatctttttgtacttgatccaaaagcaaccaatacacaaaaccattctatccacagactgaatc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
471529 |
caatcaaaggtttaatctttttgtacttgatccaaaagcaaccaagacacaaaaccattctatccacagactgaatc |
471453 |
T |
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