View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6773_low_2 (Length: 469)
Name: NF6773_low_2
Description: NF6773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6773_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 35970985 - 35971326
Alignment:
| Q |
14 |
atcagggcaaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttggggg |
113 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35970985 |
atcagggcaaaaggttcaaa-gaaagggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaagg-----gggg |
35971078 |
T |
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| Q |
114 |
aattgggttggtgatattaggaaaccaaaaggtagtaaactttggttaggtacttttcttactgctcaagaaactgctcttggcttatgattatgctgca |
213 |
Q |
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| T |
35971079 |
aattgggttggtgatattaggaaaccaaaaggtagtaaactttggttaggtacttctcttactgctcaagaaactgctcttg-cttatgattatgctgcc |
35971177 |
T |
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| Q |
214 |
agagtcatgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttcattaaggaataattgaaggattcttcattggcttctgctag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
35971178 |
agagtcatgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttcattaaggaatatttgaaggattcttcattggcttctactag |
35971277 |
T |
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| Q |
314 |
ctgctgttcttcggtagtaacaactcctgtaaaatttgagacaacagct |
362 |
Q |
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| T |
35971278 |
ctgctgttcttcggtagtaacaactcctgtaaaatctgagacaacagct |
35971326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 35978650 - 35978312
Alignment:
| Q |
23 |
aaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattgggtt |
122 |
Q |
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| T |
35978650 |
aaaggttcaaa-gaaagggtgtatgaaaggtaaaggaggacctcaaaactcggagaataagtatcgaggtgttagacagaggacttgggggaaatgggtt |
35978552 |
T |
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| Q |
123 |
ggtgatattaggaaaccaaa---aggtagtaaactttggttaggtacttttcttactgctcaagaaactgctcttggcttatgattatgctgcaagagtc |
219 |
Q |
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| T |
35978551 |
gctgagattagggaaccaaatagaggaagtagactttggttaggtacttttccgacggctcaagaagctgctctt-gcttatgattatgctgctagagcc |
35978453 |
T |
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| Q |
220 |
atgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttc-attaaggaataattgaaggattcttcattggcttctgctagctgct |
318 |
Q |
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||||||||||||||||||||||||||||| || |||| | |||||||||| || ||| ||||||| ||||||||||||||| || |||||||||| | |
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| T |
35978452 |
atgtatggtccttctgcgcgacttaactttcctgatatctcagattatagatctattcaggaatatttgaaggattcttcagcagcagctgctagctgtt |
35978353 |
T |
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| Q |
319 |
gttcttcggtagtaacaactcctgtaaaatttgagacaaca |
359 |
Q |
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| T |
35978352 |
gttcttcggtggcaacaacgcctgcgacatctgagacaaca |
35978312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 35975625 - 35975333
Alignment:
| Q |
21 |
caaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattggg |
120 |
Q |
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||||||||||||| |||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||| |
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| T |
35975625 |
caaaaggttcaaa-gaaaggatgtatgaaagggaaaggaggacctcaaaactcaga--ataaatatagaggtgtcagacaaaggacttgggggaaatggg |
35975529 |
T |
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| Q |
121 |
ttggtgatattaggaaaccaaa---aggtagtaaactttggttaggtacttttcttactgctcaagaaactgctcttggcttatgattatgctgcaagag |
217 |
Q |
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| | ||| |||||| |||| || || |||| |||| |||||||||||| | ||| ||||||||| | |||||| |||||||||| |||||| |||| |
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| T |
35975528 |
tggctgaaattagggaacctaatagtgggagtagacttaagttaggtactttccctacagctcaagaagccgctctt-gcttatgattctgctgctagag |
35975430 |
T |
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| Q |
218 |
tcatgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttc-attaaggaataattgaaggattcttcattggcttctgctag |
313 |
Q |
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||||||||| ||||||| ||||||||||| ||||||| | |||||||||| || |||||||||| |||| ||||||||||| |||| ||||||| |
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| T |
35975429 |
ctatgtatggtacttctgcacgacttaacttgcccgatatctcagattatagctctgttaaggaatatttgatggattcttcatcggctgctgctag |
35975333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 35971586 - 35971690
Alignment:
| Q |
361 |
cttttgggccatacagataa---taataatacaattggtgaatttggagggatgcaaagtttgaattagattcttaaaaattgatttggataatgatgtc |
457 |
Q |
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| T |
35971586 |
cttttgggccatacagataataataataatacaattggtgaatttggagggatgcaaagtttgaattagattcttaaaaattgatttggataatgatgtg |
35971685 |
T |
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| Q |
458 |
catct |
462 |
Q |
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||||| |
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| T |
35971686 |
catct |
35971690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 37650927 - 37651016
Alignment:
| Q |
33 |
aagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattgggtt |
122 |
Q |
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|||||| ||||||||||||| |||||||| || ||||| | | ||| ||||||||||| |||||||||||||||||||| |||||| |
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| T |
37650927 |
aagaaagggtgtatgaaaggtaaaggagggccggaaaactcccggtgtaattatagaggtgtgagacaaaggacttgggggaaatgggtt |
37651016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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