View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6773_low_5 (Length: 372)

Name: NF6773_low_5
Description: NF6773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6773_low_5
NF6773_low_5
[»] chr7 (1 HSPs)
chr7 (1-361)||(27152425-27152785)
[»] chr3 (3 HSPs)
chr3 (11-297)||(38648385-38648671)
chr3 (11-192)||(15474636-15474817)
chr3 (62-165)||(3660869-3660972)
[»] chr4 (2 HSPs)
chr4 (11-186)||(7588832-7589007)
chr4 (239-356)||(14290331-14290448)
[»] chr2 (3 HSPs)
chr2 (11-196)||(42404420-42404605)
chr2 (72-162)||(16321242-16321332)
chr2 (62-165)||(39011320-39011423)
[»] chr1 (2 HSPs)
chr1 (26-171)||(50237783-50237928)
chr1 (11-167)||(5194256-5194412)
[»] chr5 (2 HSPs)
chr5 (10-162)||(23943857-23944009)
chr5 (90-192)||(7812590-7812692)
[»] chr6 (1 HSPs)
chr6 (62-163)||(13028667-13028768)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 27152785 - 27152425
Alignment:
Q  1 ttaggcttcatggtctatccaagaagcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  27152785 ttaggcttcatggtctatccaagaagcttcaaaacggaaagggcgaggccctctggctaaagggaggccaacaaaatggaggaggatatgattgtgatca 27152686  T
Q  101 gaatgaagtctacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagctttttagagaggatgtgat 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27152685 gaatgaagtctacagagaacctccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagctttttagagacgatgtgat 27152586  T
Q  201 gactgttgttgttttgttgccaggtataacggtcgtcggtggttataaggtcaaggaggttgcagttatccataaggttggcgaagatggcagctctaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27152585 gactgttgttgttttgttgccaggtataacggtcgtcggtggttataaggtcaaggaggttgcagttatccatgaggttggcgaagatggcagctctaga 27152486  T
Q  301 gttgttaaaaataccaccccattggttactagggaggagagtttcgttgaaatcactgatg 361  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27152485 gttgttaaaaataccaccccattggttactagggagtagagtttcgttgaaatcactgatg 27152425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 38648385 - 38648671
Alignment:
Q  11 tggtctatccaagaagcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtc 110  Q
    ||||| |||||||  |||||||| |||||||| | ||||||| | ||||||||||||||| ||||| ||||||||| | | || |  |||||||||||||    
T  38648385 tggtcaatccaagctgcttcaaagcggaaaggcctgggccctctagctaaagggaggccaccaaaacggaggaggagagggttatggtcagaatgaagtc 38648484  T
Q  111 tacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagctttttagagaggatgtgatgactgttgtt 210  Q
    | || ||||  || |||||||||||| | |||||||  |||||||||| ||||||||  || ||||| || ||||| ||||| | | ||  || ||||||    
T  38648485 tgcaaagaaactcaacaaaagcttcaggaaaggaaacacgccaatcaatatttgcaattcctctatcaagttttttggagagaacgcgaataccgttgtt 38648584  T
Q  211 gttttgttgccaggtataacggtcgtcggtggttataaggtcaaggaggttgcagttatccataaggttggcgaagatggcagctct 297  Q
    |||  | ||||| ||  ||||  |  | |||||  |||||||||||||||||||||| | ||| ||||||| |||||  ||||||||    
T  38648585 gttgcggtgccaagtgaaacgagcacctgtggtcgtaaggtcaaggaggttgcagttgttcatgaggttggagaagagagcagctct 38648671  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 15474636 - 15474817
Alignment:
Q  11 tggtctatccaagaagcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtc 110  Q
    ||||||||||| |  ||||||||||| || || |  |||||| | |||| |||||| ||  ||||| ||||||||| | ||||||  |||||||| | ||    
T  15474636 tggtctatccaggctgcttcaaaacgaaagggtctaggccctctagctagagggagaccgccaaaacggaggaggagaggattgtggtcagaatgcaatc 15474735  T
Q  111 tacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagctttttagagag 192  Q
    ||||||| || || |||||||||| | |||||||||| ||||| || ||||| || |  || || || ||||||||||||||    
T  15474736 tacagaggacttcaacaaaagcttaagggaaggaaagacgccagtcgacattcgccaaacctctgtcaagctttttagagag 15474817  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 3660869 - 3660972
Alignment:
Q  62 gggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtctacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacat 161  Q
    ||||||||| ||||| ||||||| |   |||||| |||||| ||||| ||||| ||||| || |||||||||||| |||||   | ||||||||| ||||    
T  3660869 gggaggccaccaaaacggaggagaagtggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatctacat 3660968  T
Q  162 ttgc 165  Q
    ||||    
T  3660969 ttgc 3660972  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 7588832 - 7589007
Alignment:
Q  11 tggtctatccaagaagcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtc 110  Q
    ||||| ||||||| ||||||||| || ||||| |  |||||| | ||||||||||| ||| ||||  |||| || | | |||||| |||||| || || |    
T  7588832 tggtcgatccaagcagcttcaaagcgaaaaggtctaggccctctagctaaagggagaccaccaaatcggagaagcaaaggattgtgatcagagtggagcc 7588931  T
Q  111 tacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagcttttt 186  Q
    |||| || || ||||||||||||||| ||||||| | ||||||||||| ||| || ||||| |  |||||||||||    
T  7588932 tacaaagtacttccacaaaagcttcagggaaggacatgcgccaatcaatattagctaggcctcggtcgagcttttt 7589007  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 14290448 - 14290331
Alignment:
Q  239 gtggttataaggtcaaggaggttgcagttatccataaggttggcgaagatggcagctctagagttgttaaaaataccaccccattggttactagggagga 338  Q
    |||||| |||||||||| || || || |||||||  | |||||| |||||||  ||||||||||  ||||||||||| || | ||| | |||||| ||||    
T  14290448 gtggttgtaaggtcaagcagattacaattatccaggaagttggcaaagatggtggctctagagtgattaaaaatacctccacgttgatcactaggaagga 14290349  T
Q  339 gagtttcgttgaaatcac 356  Q
    | |||||||| |||||||    
T  14290348 gggtttcgttaaaatcac 14290331  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 42404420 - 42404605
Alignment:
Q  11 tggtctatccaagaagcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtc 110  Q
    ||||||||||| |  |||||||||||||| || |  |||||| | | || |||||| ||  ||||| ||||||||| | |||||| ||| ||||| |  |    
T  42404420 tggtctatccaggctgcttcaaaacggaagggtctaggccctctaggtagagggagaccgccaaaacggaggaggagaggattgtgatctgaatgcaaac 42404519  T
Q  111 tacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagctttttagagaggatg 196  Q
     |||||| || || |||||| ||||  | |||||||||||||| ||||||||||| |  || ||||| ||||||||||||||||||    
T  42404520 gacagaggacctcaacaaaaccttcgggaaaggaaaggcgccagtcaacatttgccaaacctctatcaagctttttagagaggatg 42404605  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 16321332 - 16321242
Alignment:
Q  72 caaaatggaggaggatatgattgttatcagaatgaagtctacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatt 162  Q
    ||||| ||||||||| | | || | ||||||||| | ||||||||| || || |||||||||||| |||||||||| ||||| ||||||||    
T  16321332 caaaacggaggaggagagggttatgatcagaatgcaatctacagaggacttcaacaaaagcttcagggaaggaaagacgccagtcaacatt 16321242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 39011423 - 39011320
Alignment:
Q  62 gggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtctacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacat 161  Q
    ||||||||| ||||| ||||||| |   |||||| |||||| ||||| ||||| ||||| || |||||||||||| |||||   | ||||||||| ||||    
T  39011423 gggaggccaccaaaacggaggagaagtggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatctacat 39011324  T
Q  162 ttgc 165  Q
    ||||    
T  39011323 ttgc 39011320  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 50237783 - 50237928
Alignment:
Q  26 gcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtctacagagaacgtcca 125  Q
    ||||||||||| ||||| |   ||||| | ||||||||||||||| ||||  |||| ||||   |||||| ||||||||| || | ||| || || || |    
T  50237783 gcttcaaaacgaaaaggtctaagccctctagctaaagggaggccaccaaagcggagaaggaggggattgtgatcagaatgtagacgacataggacctcaa 50237882  T
Q  126 caaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcc 171  Q
    | ||||||||||||||||| |  ||||| |||||||| ||||||||    
T  50237883 cgaaagcttcaaggaaggatatacgccagtcaacattggcaaggcc 50237928  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 5194256 - 5194412
Alignment:
Q  11 tggtctatccaagaagcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtc 110  Q
    ||||| |||||||  ||||||||||||||| | |  |||||| | |||||||||||| || ||||  ||||||||| | |||| | ||| ||||  ||||    
T  5194256 tggtcaatccaagctgcttcaaaacggaaatgtctaggccctctagctaaagggaggtcaccaaagcggaggaggagaggattatgatcggaattgagtc 5194355  T
Q  111 tacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaa 167  Q
    | ||  | || || |||||||||||| | |||||||  | |||||||||| ||||||    
T  5194356 tgcatgggacctcaacaaaagcttcaggaaaggaaacacaccaatcaacacttgcaa 5194412  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 23944009 - 23943857
Alignment:
Q  10 atggtctatccaagaagcttcaaaacggaaagggcggggccctttggctaaagggaggccaacaaaatggaggaggatatgattgttatcagaatgaagt 109  Q
    |||||||||||| |  |||||||| |||||||| |  |||||| | || | |||||||||| ||||| |||| |||| | |||| | ||| || || | |    
T  23944009 atggtctatccaggctgcttcaaatcggaaaggcctaggccctctagcaagagggaggccaccaaaacggagaaggagaggattatgatccgagtgtaat 23943910  T
Q  110 ctacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatt 162  Q
    ||||| ||||| || |||||||||||  ||||||| | ||||||||| |||||    
T  23943909 ctacaaagaacttcaacaaaagcttctgggaaggataagcgccaatctacatt 23943857  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 7812692 - 7812590
Alignment:
Q  90 gattgttatcagaatgaagtctacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagctttttaga 189  Q
    |||||| |||||||||||||||||| || || | |||||| |||||  |||| || |  ||||| |||||||| |||||||| || || |||||||| ||    
T  7812692 gattgtgatcagaatgaagtctacaaaggacctgcacaaaggcttctgggaaagacatacgccagtcaacattagcaaggcctctgtcaagctttttcga 7812593  T
Q  190 gag 192  Q
    |||    
T  7812592 gag 7812590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 13028667 - 13028768
Alignment:
Q  62 gggaggccaacaaaatggaggaggatatgattgttatcagaatgaagtctacagagaacgtccacaaaagcttcaaggaaggaaaggcgccaatcaacat 161  Q
    ||||||||| ||||| ||||||| |   |||||| |||||| ||||| ||||| ||||| || |||||||||||| |||||   | ||||||||| ||||    
T  13028667 gggaggccaccaaaacggaggagaaggggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatctacat 13028766  T
Q  162 tt 163  Q
    ||    
T  13028767 tt 13028768  T

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