View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6773_low_8 (Length: 237)
Name: NF6773_low_8
Description: NF6773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6773_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 52947998 - 52948213
Alignment:
| Q |
18 |
aagtttatgtttctaaaatttgacagggatgagtgtgtcagttgtatttcaccaagggggtgaatttgttagggactacattttgtattacactgggggt |
117 |
Q |
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| T |
52947998 |
aagtttatgtttctaaaatttgacagggatgagtgtgtcaattgtatttcaccatgggggtgaatttgttacggactatattttgtattacactgggggt |
52948097 |
T |
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| Q |
118 |
caagaacacgtagt--taatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagta |
215 |
Q |
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| T |
52948098 |
caagaacacgtagtagtaatgggattgatagggataggtggtgttacttcgaagcgactggtatactaaaagagttaggttatgatgatcaccttaagta |
52948197 |
T |
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| Q |
216 |
tcgtttattgtggtat |
231 |
Q |
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| T |
52948198 |
tcatttatggtggtat |
52948213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 31810722 - 31810817
Alignment:
| Q |
139 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatatt |
234 |
Q |
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| T |
31810722 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatatt |
31810817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 7797472 - 7797575
Alignment:
| Q |
131 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
230 |
Q |
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| T |
7797472 |
ttaatgagattgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattttgatcaccttaagtataggttatggtggta |
7797571 |
T |
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| Q |
231 |
tatt |
234 |
Q |
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|||| |
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| T |
7797572 |
tatt |
7797575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 19393467 - 19393551
Alignment:
| Q |
131 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagta |
215 |
Q |
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| T |
19393467 |
ttaatgagattgataaggacaagtggtgctactttgaagctactaggatattgaaagatttaggatatgatgatcaccttaagta |
19393551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 30320491 - 30320396
Alignment:
| Q |
139 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatatt |
234 |
Q |
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| T |
30320491 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatatt |
30320396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 22055067 - 22055162
Alignment:
| Q |
139 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatatt |
234 |
Q |
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| T |
22055067 |
attgataaggacaagtgttgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatatt |
22055162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 28430291 - 28430206
Alignment:
| Q |
149 |
ataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatatt |
234 |
Q |
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|||||||| | || |||||||| |||||||| |||| |||| || ||||||||||| ||||||||||| |||| |||||||||| |
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| T |
28430291 |
ataggtggagctattttgaagccactggtattttaaagcagtttggatatgatgatcatcttaagtatcgattatggtggtatatt |
28430206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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