View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6773_low_9 (Length: 227)

Name: NF6773_low_9
Description: NF6773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6773_low_9
NF6773_low_9
[»] chr6 (6 HSPs)
chr6 (6-223)||(35095024-35095241)
chr6 (189-226)||(33787839-33787876)
chr6 (174-223)||(13360659-13360708)
chr6 (174-223)||(24774682-24774731)
chr6 (174-223)||(31668782-31668831)
chr6 (175-223)||(10452457-10452505)
[»] scaffold0590 (1 HSPs)
scaffold0590 (166-223)||(1171-1228)
[»] scaffold0275 (1 HSPs)
scaffold0275 (166-223)||(2747-2804)
[»] scaffold0091 (1 HSPs)
scaffold0091 (166-223)||(5935-5992)
[»] chr8 (7 HSPs)
chr8 (166-223)||(5226518-5226575)
chr8 (174-223)||(14482126-14482175)
chr8 (165-214)||(43208239-43208288)
chr8 (172-226)||(3645910-3645964)
chr8 (173-226)||(8823487-8823540)
chr8 (174-223)||(35869761-35869810)
chr8 (174-223)||(39392758-39392807)
[»] chr7 (6 HSPs)
chr7 (174-223)||(49060464-49060513)
chr7 (175-223)||(30496629-30496677)
chr7 (166-216)||(45078209-45078259)
chr7 (175-216)||(27492720-27492761)
chr7 (174-222)||(18749908-18749956)
chr7 (175-223)||(46213728-46213776)
[»] chr4 (7 HSPs)
chr4 (166-223)||(11262850-11262907)
chr4 (174-223)||(45128407-45128456)
chr4 (171-223)||(4191660-4191712)
chr4 (166-225)||(24193501-24193560)
chr4 (172-226)||(2980565-2980619)
chr4 (174-223)||(24443962-24444011)
chr4 (171-223)||(30024621-30024673)
[»] chr1 (5 HSPs)
chr1 (174-223)||(23895260-23895309)
chr1 (170-216)||(44032103-44032149)
chr1 (174-223)||(870969-871018)
chr1 (174-223)||(6659627-6659676)
chr1 (173-226)||(23370392-23370445)
[»] scaffold0654 (1 HSPs)
scaffold0654 (174-222)||(6735-6783)
[»] scaffold0014 (1 HSPs)
scaffold0014 (174-222)||(116654-116702)
[»] chr3 (2 HSPs)
chr3 (174-226)||(44284152-44284204)
chr3 (174-223)||(48528502-48528551)
[»] scaffold0100 (1 HSPs)
scaffold0100 (173-223)||(42540-42590)
[»] chr5 (6 HSPs)
chr5 (166-223)||(11835192-11835250)
chr5 (178-215)||(11095574-11095611)
chr5 (174-223)||(35960338-35960387)
chr5 (166-222)||(14714937-14714993)
chr5 (179-223)||(29588809-29588853)
chr5 (174-226)||(36638670-36638722)
[»] chr2 (5 HSPs)
chr2 (189-223)||(7936965-7936999)
chr2 (166-223)||(31461354-31461411)
chr2 (174-223)||(43133890-43133939)
chr2 (174-222)||(7193950-7193998)
chr2 (166-222)||(9878037-9878093)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 35095241 - 35095024
Alignment:
Q  6 agattccagcttcatctttttctggtaagatacatatgtatatagactcatgaattcaaagaataaatgtggatttcattcatcaaagaaagagataagc 105  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095241 agattccagcttcatctttttctggtaagatatatatgtatatagactcatgaattcaaagaataaatgtggatttcattcatcaaagaaagagataagc 35095142  T
Q  106 tagtttagcaatgtatataataccttttatggataaacagtctaaacacttatagcatatataaacgtttatcatataagtaattatgtataaaccattt 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095141 tagtttagcaatgtatataataccttttatggataaacagtttaaacacttatagcatatataaacgtttatcatataagtaattatgtataaaccattt 35095042  T
Q  206 ctataacaaaatataaaa 223  Q
    ||||||||||||||||||    
T  35095041 ctataacaaaatataaaa 35095024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 33787876 - 33787839
Alignment:
Q  189 ttatgtataaaccatttctataacaaaatataaaacaa 226  Q
    |||||||||||| |||||||||||||||||||||||||    
T  33787876 ttatgtataaactatttctataacaaaatataaaacaa 33787839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 13360659 - 13360708
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||  ||||||  |||| ||||||||||||||||||||||    
T  13360659 ttatcatataagtgcttatgtgcaaactatttctataacaaaatataaaa 13360708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 24774682 - 24774731
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||| |||||  |||| ||||||| ||||||||||||||||||||||    
T  24774682 ttatcatgtaagtgcttatatataaactatttctataacaaaatataaaa 24774731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 31668831 - 31668782
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||  |||||||||| | ||||||||||||||| ||||||    
T  31668831 ttatcatataagtgcttatgtataagctatttctataacaaaacataaaa 31668782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 10452505 - 10452457
Alignment:
Q  175 tatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||| |||  |||||||||| | ||||||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaa 10452457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 1228 - 1171
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||| ||||||||||||  |||||||||| | ||||||||||||||| ||||||    
T  1228 ataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaa 1171  T

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Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 2747 - 2804
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||| ||||||||||||  |||||||||| | ||||||||||||||| ||||||    
T  2747 ataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaa 2804  T

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Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 5935 - 5992
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||| ||||||||||||||  |||||||||||| ||||| ||||||||| ||||||    
T  5935 ataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaa 5992  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 5226518 - 5226575
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||| ||||||||||||||  |||||||||||| ||||| ||||||||| ||||||    
T  5226518 ataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaa 5226575  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 14482126 - 14482175
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||  |||||||||||| ||||||||||||||| ||||||    
T  14482126 ttatcatataagtgcttatgtataaactatttctataacaaaagataaaa 14482175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 43208288 - 43208239
Alignment:
Q  165 tataaacgtttatcatataagtaattatgtataaaccatttctataacaa 214  Q
    |||||||||| |||||||||||| |||||||||| | |||||||||||||    
T  43208288 tataaacgttcatcatataagtatttatgtataagctatttctataacaa 43208239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 3645964 - 3645910
Alignment:
Q  172 gtttatcatataagtaattatgtataaaccatttctataacaaaatataaaacaa 226  Q
    |||||||||||||||  || ||||||| | |||||||||| ||||||||||||||    
T  3645964 gtttatcatataagtgcttgtgtataagctatttctataagaaaatataaaacaa 3645910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 8823540 - 8823487
Alignment:
Q  173 tttatcatataagtaattatgtataaaccatttctataacaaaatataaaacaa 226  Q
    |||||||| |||||  |||| ||||| ||||||||||||||||| |||||||||    
T  8823540 tttatcatttaagtgcttatatataagccatttctataacaaaagataaaacaa 8823487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 35869761 - 35869810
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||  |||||||||| | ||||||| ||||||||||||||    
T  35869761 ttatcatataagttcttatgtataagcgatttctacaacaaaatataaaa 35869810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 39392807 - 39392758
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||   ||||||||||| ||||||||||||||| ||||||    
T  39392807 ttatcatataagtggctatgtataaactatttctataacaaaagataaaa 39392758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 49060464 - 49060513
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||| |||||||||| | ||||||||||||||| ||||||    
T  49060464 ttatcatataagtatttatgtataagctatttctataacaaaaaataaaa 49060513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30496629 - 30496677
Alignment:
Q  175 tatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||| ||||||  |||||||||||| ||||||||||||||||||||||    
T  30496629 tatcacataagtgtttatgtataaactatttctataacaaaatataaaa 30496677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 45078209 - 45078259
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaa 216  Q
    |||||||||||||||||||||  |||||||||| | |||| ||||||||||    
T  45078209 ataaacgtttatcatataagtgcttatgtataagctatttttataacaaaa 45078259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 27492720 - 27492761
Alignment:
Q  175 tatcatataagtaattatgtataaaccatttctataacaaaa 216  Q
    ||||||||||||  |||||||||||| |||||||||||||||    
T  27492720 tatcatataagttcttatgtataaactatttctataacaaaa 27492761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 18749956 - 18749908
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaa 222  Q
    |||||||||||||| || |||| || ||||||||||||||||| |||||    
T  18749956 ttatcatataagtacttgtgtaaaacccatttctataacaaaagataaa 18749908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 46213728 - 46213776
Alignment:
Q  175 tatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||||||||  ||||||| || | ||||||||||||||||||||||    
T  46213728 tatcatataagtgcttatgtaaaagctatttctataacaaaatataaaa 46213776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 11262907 - 11262850
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||| |||||||||||||||| |||||||||| | |||||||||| |||||| ||||    
T  11262907 ataaatgtttatcatataagtatttatgtataacctatttctataataaaatacaaaa 11262850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 45128456 - 45128407
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||| | |||||||||||| ||||||||||||||| ||||||    
T  45128456 ttatcatataagaacttatgtataaactatttctataacaaaagataaaa 45128407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 4191660 - 4191712
Alignment:
Q  171 cgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||||||||||||  |||||||||| | ||||||||||||||| ||||||    
T  4191660 cgtttatcatataagtgcttatgtataagctatttctataacaaaagataaaa 4191712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 24193501 - 24193560
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaaca 225  Q
    ||||||| |||||||||||||| ||||||||||   |||| || ||||||||||||||||    
T  24193501 ataaacgcttatcatataagtacttatgtataagttatttttacaacaaaatataaaaca 24193560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 2980619 - 2980565
Alignment:
Q  172 gtttatcatataagtaattatgtataaaccatttctataacaaaatataaaacaa 226  Q
    |||||||||||||||  |||||||||| | ||||||||||||||| || ||||||    
T  2980619 gtttatcatataagtgcttatgtataagctatttctataacaaaaaatgaaacaa 2980565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 24443962 - 24444011
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||  |||||||||| | ||||||| ||||||||||||||    
T  24443962 ttatcatataagttcttatgtataagcgatttctacaacaaaatataaaa 24444011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 30024621 - 30024673
Alignment:
Q  171 cgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||||||||||||| ||||| ||||   ||||||||||||||| ||||||    
T  30024621 cgtttatcatataagtacttatgcataagttatttctataacaaaagataaaa 30024673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 23895260 - 23895309
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||||||||| ||||||||||| | ||||||||||||||| ||||||    
T  23895260 ttatcatataagttattatgtataagctatttctataacaaaagataaaa 23895309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 44032149 - 44032103
Alignment:
Q  170 acgtttatcatataagtaattatgtataaaccatttctataacaaaa 216  Q
    |||||||||||||||||  |||||||||| || ||||||||||||||    
T  44032149 acgtttatcatataagtgtttatgtataagccgtttctataacaaaa 44032103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 870969 - 871018
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||  |||||||||||| |||| |||||||||| ||||||    
T  870969 ttatcatataagtgcttatgtataaactatttttataacaaaagataaaa 871018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 6659627 - 6659676
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||  |||||||||||| ||||||||| ||||| ||||||    
T  6659627 ttatcatataagtgcttatgtataaactatttctatagcaaaagataaaa 6659676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 23370445 - 23370392
Alignment:
Q  173 tttatcatataagtaattatgtataaaccatttctataacaaaatataaaacaa 226  Q
    ||||||||||||||| ||| |||||| | |||||||| |||||| |||||||||    
T  23370445 tttatcatataagtacttacgtataagctatttctattacaaaagataaaacaa 23370392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 6783 - 6735
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaa 222  Q
    |||||||||||||  |||||||||||| ||||||||||||||| |||||    
T  6783 ttatcatataagtgcttatgtataaactatttctataacaaaaaataaa 6735  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 116702 - 116654
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaa 222  Q
    |||||||||||||  |||||||||||| ||||||||||||||| |||||    
T  116702 ttatcatataagtgcttatgtataaactatttctataacaaaaaataaa 116654  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 44284204 - 44284152
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaacaa 226  Q
    |||||||||||||| | |||||||| | ||||||||||||||| |||||||||    
T  44284204 ttatcatataagtactaatgtataagctatttctataacaaaaaataaaacaa 44284152  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 48528502 - 48528551
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||| |||||||||| | ||||||||||||| | ||||||    
T  48528502 ttatcatataagtacttatgtataagctatttctataacaagaaataaaa 48528551  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 42540 - 42590
Alignment:
Q  173 tttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||||||||||  ||||||||||  |||||||||||||||| ||||||    
T  42540 tttatcatataagtgcttatgtataagtcatttctataacaaaagataaaa 42590  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 11835192 - 11835250
Alignment:
Q  166 ataaacgtttatcat-ataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||| ||||||| ||||||  ||||||||||||||||| |||||||||| ||||||    
T  11835192 ataaacgcttatcatgataagtgtttatgtataaaccatttttataacaaaagataaaa 11835250  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 11095611 - 11095574
Alignment:
Q  178 catataagtaattatgtataaaccatttctataacaaa 215  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  11095611 catataagtgattatgtataaactatttctataacaaa 11095574  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 35960338 - 35960387
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||| ||||| |||||| |||||||||| |||| ||||||    
T  35960338 ttatcatataagtatttatgcataaactatttctataataaaagataaaa 35960387  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 14714993 - 14714937
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaa 222  Q
    ||||||| || || ||||||| ||||||||||| | ||||||||||||||| |||||    
T  14714993 ataaacgcttctcgtataagtgattatgtataagctatttctataacaaaacataaa 14714937  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 29588809 - 29588853
Alignment:
Q  179 atataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    ||||||||  |||||||||| | ||||||||||||||||||||||    
T  29588809 atataagtgcttatgtataagctatttctataacaaaatataaaa 29588853  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 36638670 - 36638722
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaacaa 226  Q
    |||||||||| ||  | |||||||||| ||||||||||||||| |||||||||    
T  36638670 ttatcatataggtgttaatgtataaactatttctataacaaaagataaaacaa 36638722  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 7936965 - 7936999
Alignment:
Q  189 ttatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||||||||||||||||||||||| ||||||    
T  7936965 ttatgtataaaccatttctataacaaaagataaaa 7936999  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 31461354 - 31461411
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||||| ||||||||||||  |||| ||||| | ||||||||||||||| ||||||    
T  31461354 ataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaa 31461411  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 43133890 - 43133939
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaaa 223  Q
    |||||| ||||||| |||||||||||  ||||||| ||||||||||||||    
T  43133890 ttatcacataagtatttatgtataaattatttctaaaacaaaatataaaa 43133939  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 7193998 - 7193950
Alignment:
Q  174 ttatcatataagtaattatgtataaaccatttctataacaaaatataaa 222  Q
    ||||||||||||||   |||||||| | |||||||||||||||||||||    
T  7193998 ttatcatataagtacccatgtataagctatttctataacaaaatataaa 7193950  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 9878093 - 9878037
Alignment:
Q  166 ataaacgtttatcatataagtaattatgtataaaccatttctataacaaaatataaa 222  Q
    ||||||||| |||||||||||  |||||||||||| |||| |  |||||||||||||    
T  9878093 ataaacgttaatcatataagtgcttatgtataaactatttatgcaacaaaatataaa 9878037  T

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