View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6774_high_1 (Length: 866)
Name: NF6774_high_1
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 406 - 848
Target Start/End: Original strand, 29673502 - 29673933
Alignment:
| Q |
406 |
acaataacctagtgtttattataatgttcctaccaatattatatttgtttgagaagaaaaatatcattataatattgggaaagttccttaaattgagagc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29673502 |
acaataacctagtgtttattataatgttcctaccaatattatatttgtttgagaagaaaaatatcattataatattgggaaagttccttaaattgtgagc |
29673601 |
T |
|
| Q |
506 |
aatcacacatgacaattcaagacaagaaaacaaagtaaattatcattgtgatcttaaatatgttaatttctccatgtatattttttattgtgtctttcct |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
29673602 |
aatcacacatgacaattcaagacaagaaaacaaagtaaattatcattgtgatcttaaatatgttaatttctcaatgtata---------gtgtttttcct |
29673692 |
T |
|
| Q |
606 |
tagtaattttagcaattaaattgattaggatcttgctaacgagttttttaaagagcactctttaaggaaacccaattaagaaactactttttgnnnnnnn |
705 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| | || | |||||||| | ||||||| ||| || |||||| |
|
|
| T |
29673693 |
tagtaattttagcaattaaatcgattagggtcttgctaacaagttttttaaaaaacattttttaaggatattcaattaaaaaattattttttg--aaaaa |
29673790 |
T |
|
| Q |
706 |
nnntaatatttcaatttccaattgattcattagcatttttcaactgattattgaaaaaacacattctgagacacccgaaaaatacgtagaaatcaaattg |
805 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
29673791 |
acttaatatttcaatttccaactgattcattagcattttccaattgattattgaaaaaatacattctgagacacccgaaaaatacataaaaatcaaattg |
29673890 |
T |
|
| Q |
806 |
acttaggaaaggcacattaagaaatgtttgcatgattttgata |
848 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29673891 |
agttaggaaaggcacattaagaaatgtttgcatgatattgata |
29673933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 228 - 388
Target Start/End: Original strand, 29673316 - 29673476
Alignment:
| Q |
228 |
tgaactaaaagatgtaagagaagaccacgtgtaagattaagaaaatggaagaggggactcattaaaaaggtttgggatttcattgccaataagtgatcaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29673316 |
tgaactaaaagatgtaagagaagaccacgtgtaagattaagaaaatggaagaggggactcattaaaaaggtttgggatttcattgccaataagtgatcaa |
29673415 |
T |
|
| Q |
328 |
gacaaggtggggtatgaatgaggggtattgatgcatcatacaatgccacgaataccttgtt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29673416 |
gacaaggtggggtatgaatgaggggtattgatgcatcatgcaatgccacgaataccttgtt |
29673476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29673093 - 29673144
Alignment:
| Q |
1 |
atccatgtgtttgatgaagccgttgatgttgccatagtgattataatagtta |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29673093 |
atccatgtgtttgatgaagccgttgatgttgccatagtgatgataatagtta |
29673144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University