View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_high_11 (Length: 281)
Name: NF6774_high_11
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 5864377 - 5864636
Alignment:
| Q |
19 |
caaatgtatcaaaactcttcaatttatgaatgtacatgctctcaatgttcgtaatttatgttagtttctagggtttgaattcttacatccttgttattat |
118 |
Q |
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| T |
5864377 |
caaatgtatcaaaactcttcaatttatgaatgtacatgctctcaatgttcgtaatttatgttagtttctagggtttgaattcttacatccttgttattat |
5864476 |
T |
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| Q |
119 |
gctctccgtga---tcctcaacccaccaaccgagctacgatctataagaaat-nnnnnnnnnttgaatataatgtgatagttccataattaatattgatt |
214 |
Q |
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|||||||||| |||||||| ||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
5864477 |
tctctccgtgatcctcctcaactcaccaactgagctacgatctacaagaaataaaaaacaaattgaaaataatgtgatagttccataattaatattgatt |
5864576 |
T |
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| Q |
215 |
gtagaaaatgaaaacagaaccatttattcaaagactaattcttgatattttctcaatatt |
274 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5864577 |
gtagaaaatgaaaacagaaccatttattcaaaggctaattcttgatattttctcaatatt |
5864636 |
T |
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