View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6774_high_12 (Length: 258)

Name: NF6774_high_12
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6774_high_12
NF6774_high_12
[»] chr1 (8 HSPs)
chr1 (1-145)||(39249619-39249765)
chr1 (166-249)||(22105398-22105481)
chr1 (166-233)||(49410532-49410599)
chr1 (208-249)||(39242627-39242668)
chr1 (166-235)||(45319613-45319682)
chr1 (166-249)||(45346270-45346353)
chr1 (166-212)||(39249545-39249591)
chr1 (166-249)||(12983535-12983618)
[»] chr2 (8 HSPs)
chr2 (166-235)||(7091118-7091187)
chr2 (166-233)||(33751512-33751579)
chr2 (166-249)||(16431866-16431949)
chr2 (166-249)||(17692609-17692692)
chr2 (166-249)||(37259677-37259760)
chr2 (166-232)||(37080737-37080803)
chr2 (209-249)||(15332748-15332788)
chr2 (166-249)||(14805580-14805663)
[»] chr8 (5 HSPs)
chr8 (166-235)||(3877575-3877644)
chr8 (166-249)||(533699-533782)
chr8 (166-249)||(30936666-30936750)
chr8 (166-227)||(13800646-13800707)
chr8 (168-235)||(1786494-1786561)
[»] chr4 (7 HSPs)
chr4 (166-249)||(28683070-28683152)
chr4 (166-235)||(42063009-42063078)
chr4 (166-235)||(47028106-47028175)
chr4 (166-249)||(20135426-20135509)
chr4 (166-233)||(24226876-24226943)
chr4 (166-249)||(55917407-55917490)
chr4 (169-233)||(45988125-45988189)
[»] chr7 (6 HSPs)
chr7 (166-235)||(34095860-34095929)
chr7 (166-249)||(45974438-45974521)
chr7 (166-233)||(6444172-6444239)
chr7 (166-249)||(29245267-29245350)
chr7 (209-249)||(29263400-29263440)
chr7 (169-232)||(47329676-47329739)
[»] scaffold0166 (1 HSPs)
scaffold0166 (166-249)||(25098-25181)
[»] chr5 (6 HSPs)
chr5 (166-249)||(24782715-24782798)
chr5 (166-227)||(31480466-31480527)
chr5 (166-233)||(6767931-6767998)
chr5 (166-233)||(39885846-39885913)
chr5 (166-233)||(40321504-40321571)
chr5 (166-233)||(41405998-41406065)
[»] scaffold0662 (1 HSPs)
scaffold0662 (166-235)||(6985-7054)
[»] chr3 (6 HSPs)
chr3 (166-227)||(29835795-29835856)
chr3 (166-249)||(39831207-39831290)
chr3 (166-232)||(20108077-20108143)
chr3 (166-232)||(29702395-29702461)
chr3 (166-233)||(12945484-12945551)
chr3 (192-235)||(55406389-55406432)
[»] chr6 (1 HSPs)
chr6 (166-227)||(945113-945174)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39249765 - 39249619
Alignment:
Q  1 cgggctggttgttggagcagtggggtccacgatataattgtagtttataatgacattggcattaagcaaacggttgcttgtacaaagcgccttaactttg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39249765 cgggatggttgttggagcagtggggtccacgatataattgtagtttataatgacattggcattaagcaaacggttgcttgtacaaagcgccttaactttg 39249666  T
Q  101 tgttgtgtttaa--tttaaactttaagcaactaaattcctttttggt 145  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  39249665 tgttgtgtttaaactttaaactttaagcaactaaattcctttttggt 39249619  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 22105398 - 22105481
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||| |||||| |||||| ||||||||| ||| |||||  ||||||||||||||||||| |||| ||| ||||||||||||    
T  22105398 ttctatgatgaagttcttcaattgactttttcggtgaagttatcctacatccaataataatgcgccatgtttttgaatgatgtc 22105481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 49410599 - 49410532
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    |||||||||||||| |||||| ||||||||| ||| ||||| |||||||||||||||||||| |||||    
T  49410599 ttctatggtgaagttcttcaaatgactttttcggtgaagttaccctacatccaataataatgcgccac 49410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 39242668 - 39242627
Alignment:
Q  208 ccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39242668 ccctacatccaataataatgtgccacgttgttgaatgatgtc 39242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 45319613 - 45319682
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||||| ||||| ||||||||||||| |||||  | ||||| ||||||||||| |||||||    
T  45319613 ttctatggtgaagtcattcaattgacttttttggtgaagttatcttacattcaataataatgcgccacgt 45319682  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 45346270 - 45346353
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||| ||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  45346270 ttctacggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 45346353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 39249591 - 39249545
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgcccta 212  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||    
T  39249591 ttctatggtgaagtccttcaattaacttttttggtgaagttgcccta 39249545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 12983618 - 12983535
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    |||||||||||||||  | || |||||||||  |  |||||  ||||||| ||||||||||| ||||| |||||||||||||||    
T  12983618 ttctatggtgaagtcaataaattgactttttcagagaagttatcctacattcaataataatgcgccacattgttgaatgatgtc 12983535  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 7091187 - 7091118
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  7091187 ttctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaataataatgtgccacgt 7091118  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 33751512 - 33751579
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  33751512 ttctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaataataatgtgccac 33751579  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 16431949 - 16431866
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  16431949 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 16431866  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 17692692 - 17692609
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  17692692 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 17692609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 37259677 - 37259760
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  37259677 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 37259760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 37080803 - 37080737
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgcca 232  Q
    ||||||||||||||  ||||| ||||||||||| | |||||  ||||||||||||||||||| ||||    
T  37080803 ttctatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataatgcgcca 37080737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 15332788 - 15332748
Alignment:
Q  209 cctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  15332788 cctacatccaataataatgcgccacattgttgaatgatgtc 15332748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 14805580 - 14805663
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || ||| |||||  |  |||||  ||||||||||||||||||| ||||| || ||||||||||||    
T  14805580 ttctatggtgaagtcattaaattgaatttttcagagaagttatcctacatccaataataatgcgccacattattgaatgatgtc 14805663  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 3877575 - 3877644
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||||| ||||| ||| ||||| ||| ||||| ||||||||||||||||||||||||||||    
T  3877575 ttctatggtgaagtcgttcaattgattttttcggtgaagttaccctacatccaataataatgtgccacgt 3877644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 533782 - 533699
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  533782 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 533699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 30936666 - 30936750
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgc-cctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||  || || ||||||||| |||||| ||   |||||||||||||||||||||||||||| || |||||||||    
T  30936666 ttctatggtgaagttatttaattgactttttcggtaaaattaatcctacatccaataataatgtgccacgtttttaaatgatgtc 30936750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 13800646 - 13800707
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatg 227  Q
    ||||||||||||||| ||||| |||||||||  || ||||| | ||||||||||||||||||    
T  13800646 ttctatggtgaagtcattcaattgactttttcagtgaagttactctacatccaataataatg 13800707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 1786494 - 1786561
Alignment:
Q  168 ctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||  ||||| |||||||||| || ||||| || |||||| |||||||||| |||||||    
T  1786494 ctatggtgaagttgttcaattgactttttttgtgaagttaccatacatctaataataatgcgccacgt 1786561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 28683152 - 28683070
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    |||||||||||||||||| || ||||||||  ||| |||||  ||||||||||||||||||| | |||||||||||||||||||    
T  28683152 ttctatggtgaagtccttaaattgacttttc-ggtgaagttatcctacatccaataataatgcgtcacgttgttgaatgatgtc 28683070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 42063009 - 42063078
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||||| ||||| ||||||||||||| |||||  ||||||| ||||||||||  |||||||    
T  42063009 ttctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataatacgccacgt 42063078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 47028106 - 47028175
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||||| ||||| ||||||||||||| |||||  ||||||| ||||||||||  |||||||    
T  47028106 ttctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataattcgccacgt 47028175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 20135509 - 20135426
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |   ||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  20135509 ttctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaataataatgcgccacattgttgaatgatgtc 20135426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 24226876 - 24226943
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    ||||||||||||||  ||||| ||||||||| | | |||||  ||||||||||||||||||| |||||    
T  24226876 ttctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccac 24226943  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 55917407 - 55917490
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||| ||||||||||| ||||  |||||||||||||||    
T  55917407 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacattcaataataatgcgccaaattgttgaatgatgtc 55917490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 45988125 - 45988189
Alignment:
Q  169 tatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    |||||||||||| ||||| ||||||||| ||| |||||  ||||||| ||||||| ||| |||||    
T  45988125 tatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaataatgatgcgccac 45988189  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 34095929 - 34095860
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||||| ||||| ||||||||||||| |||||  ||||||| ||||||||||| |||||||    
T  34095929 ttctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataatgcgccacgt 34095860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 45974521 - 45974438
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  45974521 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 45974438  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 6444239 - 6444172
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    ||||||||||||||| ||||| ||||||||| ||| |||||  ||||||| ||||||||||| |||||    
T  6444239 ttctatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaataataatgcgccac 6444172  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 29245350 - 29245267
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||  || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  29245350 ttctatggtgaagttattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 29245267  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 29263440 - 29263400
Alignment:
Q  209 cctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  29263440 cctacatccaataataatgtgccacgtttttaaatgatgtc 29263400  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 47329739 - 47329676
Alignment:
Q  169 tatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgcca 232  Q
    |||||||||||  ||||| ||||||||||| | |||||  ||||||||||||||||||| ||||    
T  47329739 tatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataatgcgcca 47329676  T

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Target: scaffold0166 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 25098 - 25181
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  25098 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 25181  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 24782715 - 24782798
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |  |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  24782715 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacattgttgaatgatgtc 24782798  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 31480466 - 31480527
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatg 227  Q
    |||||||| |||||| ||||| ||||||||| ||| ||||| ||||||||||||||||||||    
T  31480466 ttctatggagaagtcattcaattgactttttcggtgaagttaccctacatccaataataatg 31480527  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 6767931 - 6767998
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    |||||||||||||| | |||| ||||||||| ||| ||||| | |||||||||||||||||| |||||    
T  6767931 ttctatggtgaagttcctcaattgactttttcggtgaagttactctacatccaataataatgcgccac 6767998  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 39885913 - 39885846
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    ||||||||||||||  ||||| ||||||||| ||| ||||| ||||| || |||||||||||||||||    
T  39885913 ttctatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataatgtgccac 39885846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 40321571 - 40321504
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    ||||||||||||||  ||||| ||||||||| | | |||||  ||||||||||||||||||| |||||    
T  40321571 ttctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccac 40321504  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 41405998 - 41406065
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    ||||||||||||||  ||||| ||||||||| | | |||||  ||||||||||||||||||| |||||    
T  41405998 ttctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccac 41406065  T

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Target: scaffold0662 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 6985 - 7054
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||||||||||||| ||||| ||||||||||||| |||||  ||||||| ||||||||||  |||||||    
T  6985 ttctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataattcgccacgt 7054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 29835856 - 29835795
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatg 227  Q
    ||||||||||||||| ||||| |||||||||  || ||||| ||||||||||||||||||||    
T  29835856 ttctatggtgaagtcattcaattgactttttcagtgaagttaccctacatccaataataatg 29835795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 39831207 - 39831290
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccacgttgttgaatgatgtc 249  Q
    ||||||||||||||| || || |||||||||  |   ||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  39831207 ttctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaataataatgcgccacattgttgaatgatgtc 39831290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 20108143 - 20108077
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgcca 232  Q
    ||||||||||||||  ||||| ||||||||||||| |||||  | ||||||||||||||||| ||||    
T  20108143 ttctatggtgaagttattcaattgacttttttggtgaagttatcttacatccaataataatgcgcca 20108077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 29702395 - 29702461
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgcca 232  Q
    ||||||||||||||  ||||| ||||||||| ||| ||||| ||||| || ||||||||||||||||    
T  29702395 ttctatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataatgtgcca 29702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 12945551 - 12945484
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatgtgccac 233  Q
    ||||||||||||||  ||||| ||||||||| | | |||||  ||||||||||||||||||| |||||    
T  12945551 ttctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccac 12945484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 55406432 - 55406389
Alignment:
Q  192 ttttttggtaaagttgccctacatccaataataatgtgccacgt 235  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||    
T  55406432 tttttcggtgaagttaccctacatccaataataatgtgccacgt 55406389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 945174 - 945113
Alignment:
Q  166 ttctatggtgaagtccttcaactgacttttttggtaaagttgccctacatccaataataatg 227  Q
    |||||||||||||| | |||| ||||||||||| | ||||| | |||||| |||||||||||    
T  945174 ttctatggtgaagttcctcaattgacttttttgatgaagttactctacattcaataataatg 945113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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