View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6774_high_14 (Length: 243)
Name: NF6774_high_14
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_high_14 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 29838905 - 29838674
Alignment:
| Q |
12 |
acatcaaaggaatgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838905 |
acatcaaaggaatgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaac |
29838806 |
T |
|
| Q |
112 |
atgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctatcagtcgataccaaaagattaaatttcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29838805 |
atgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctattagtcgataccaaaagattaaatttcac |
29838706 |
T |
|
| Q |
212 |
attatcggattgtggcaaaatggaacaaaaaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29838705 |
attatcggattgtggcaaaatggaacaaaaaa |
29838674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 34627445 - 34627526
Alignment:
| Q |
80 |
aacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaa |
161 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| |||| || || || ||||| ||| |||||||||||||||||||| |
|
|
| T |
34627445 |
aacctgagctcagcaggcaactgtggaagaacatgcctgacagcacagtcaagatacccaccagcctttaagaagatatcaa |
34627526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University