View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_high_17 (Length: 239)
Name: NF6774_high_17
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6964997 - 6964760
Alignment:
| Q |
1 |
cataaatttcatagcaactaagttagtttcaggggaccaatggctactttcagccaatgtaccattcatgtttgagttttggaatcaaagcagtatttgg |
100 |
Q |
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| T |
6964997 |
cataaatttcatagcaactaagttagtttcaggggaccaatggctactttcagccaatgtaccattcatgtttgagttttggaatcaaagcagtatttgg |
6964898 |
T |
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| Q |
101 |
gggaaataataataacagtaattgtaaaataattgtagaagtgagtgatttattagccgtaaaaaacaaatgtcaagtggatggaaaagaggaggcagtc |
200 |
Q |
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| T |
6964897 |
gggaaataataataacagtaattgtaaaataattgtagaagtgagtgatttattagccgtaaaaaacaaatgtcaagtggatggaaaagaggaggcagtc |
6964798 |
T |
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| Q |
201 |
aaagaggtgaagccaagtgatatatagttaacaccata |
238 |
Q |
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| T |
6964797 |
aaagaggtgaagccaagtgatatatagttaacaccata |
6964760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 3762628 - 3762677
Alignment:
| Q |
175 |
aagtggatggaaaagaggaggcagtcaaagaggtgaagccaagtgatata |
224 |
Q |
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| T |
3762628 |
aagtggttgggaaagagaaggtagtcaaagaggtgaagtcaagtgatata |
3762677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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