View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_high_2 (Length: 489)
Name: NF6774_high_2
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 55110959 - 55111419
Alignment:
| Q |
18 |
gttccatcataatactccggccagttgtcttttagcagtctggcctcggcaatttgaagggcacgttttgcaatttggggtcgcccagtcttgatagccg |
117 |
Q |
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| T |
55110959 |
gttccatcataatactccggccagttgtcttttagcagtctggcctcggcaatttgaagggcacgttttgcaatttggggtcgcccagtcttgatagccg |
55111058 |
T |
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| Q |
118 |
ccgcagacaaaaaccataacataactgcaaccaccataaccgatatcaccatattaaaaaagcaaatactaaaagagttgaaaatataaagtagagaaat |
217 |
Q |
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| T |
55111059 |
ccgcagacaaaaaccataacataactgcaaccaccataaccgatatcaccatattaaaaaagcaaatactaaaagagttgaaaatataaagtagagaaat |
55111158 |
T |
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| Q |
218 |
tctctcnnnnnnnn-ctggcattagcatagcccttgtttgaagactggctaataaagtctttcataacctagtttgaaatgatagagtttgactaaatca |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55111159 |
tctctctttttttttctggcattagcatagcccttgtttgaagactggctaataaagtctttcataacctagtttgaaatgatagagtttgactaaatca |
55111258 |
T |
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| Q |
317 |
cgatgacacgtggttttatcgaagctacatagcatagtttatgctatatcgtgattttgttaaactcattgtcaatgcaaacatgcactcaaattatcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55111259 |
cgatgacacgtggttttatcgaagctacatagcatagtttatgctatatcgtgattttgttaaactcattgtcaatgcaaacatgcactcaaattatcta |
55111358 |
T |
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| Q |
417 |
catctattatattattcctatgtttccactgcatttgtttaatgatgaaatgaagtttgat |
477 |
Q |
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| T |
55111359 |
catctattatattattcctatgtttccactgcatttgtttaatgatgaaatgaagtttgat |
55111419 |
T |
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