View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6774_high_20 (Length: 226)

Name: NF6774_high_20
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6774_high_20
NF6774_high_20
[»] chr8 (9 HSPs)
chr8 (7-200)||(24686471-24686665)
chr8 (129-200)||(6254318-6254389)
chr8 (132-199)||(36696573-36696640)
chr8 (129-194)||(11597626-11597691)
chr8 (129-197)||(27422571-27422639)
chr8 (129-199)||(31943567-31943637)
chr8 (143-199)||(33124567-33124623)
chr8 (129-196)||(40737061-40737128)
chr8 (129-199)||(15552970-15553040)
[»] chr4 (11 HSPs)
chr4 (129-195)||(42056269-42056335)
chr4 (124-199)||(55826303-55826378)
chr4 (129-199)||(38376843-38376913)
chr4 (131-179)||(49030434-49030482)
chr4 (131-199)||(55762502-55762570)
chr4 (141-196)||(21443959-21444014)
chr4 (130-199)||(5459232-5459303)
chr4 (147-197)||(21864566-21864616)
chr4 (147-197)||(21920427-21920477)
chr4 (129-170)||(37012549-37012590)
chr4 (128-200)||(40319996-40320068)
[»] chr3 (5 HSPs)
chr3 (141-199)||(51206148-51206206)
chr3 (129-197)||(34681224-34681292)
chr3 (132-199)||(42841761-42841828)
chr3 (141-199)||(43260982-43261040)
chr3 (129-196)||(52474398-52474464)
[»] chr2 (5 HSPs)
chr2 (129-199)||(16464105-16464175)
chr2 (129-199)||(28428984-28429054)
chr2 (129-199)||(14941666-14941735)
chr2 (130-197)||(20557253-20557320)
chr2 (129-199)||(15239066-15239136)
[»] scaffold0027 (1 HSPs)
scaffold0027 (129-197)||(39636-39704)
[»] chr7 (4 HSPs)
chr7 (141-196)||(29127329-29127384)
chr7 (141-199)||(2736784-2736842)
chr7 (141-197)||(40236774-40236830)
chr7 (141-179)||(5546948-5546986)
[»] chr6 (2 HSPs)
chr6 (129-199)||(21809692-21809762)
chr6 (155-199)||(6802200-6802244)
[»] chr5 (2 HSPs)
chr5 (129-199)||(8008315-8008385)
chr5 (141-197)||(27299760-27299816)
[»] chr1 (10 HSPs)
chr1 (129-199)||(47312052-47312121)
chr1 (153-199)||(15351141-15351187)
chr1 (129-199)||(39097071-39097141)
chr1 (129-197)||(20354391-20354459)
chr1 (129-197)||(20556447-20556515)
chr1 (129-200)||(38508283-38508354)
chr1 (129-187)||(19068143-19068201)
chr1 (129-187)||(19116033-19116091)
chr1 (130-179)||(52435447-52435496)
chr1 (141-197)||(14258173-14258229)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 24686471 - 24686665
Alignment:
Q  7 cctatcatacctataggtccaactaggaacctccaatcacgtggccactagatctatttctgattccaccattagataatcattttttatta-taaaatg 105  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||    
T  24686471 cctatcatacctatatgtccaactaggaacctccaatcacgtggccactagatctatttctgattccaccattagataataattttttattagaaaaatg 24686570  T
Q  106 ttaatcagtctttccgaagtacaggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagta 200  Q
    ||||||||| | ||  ||||||  |||||||||| ||||||| |||||||| ||| ||||| ||| |||||||||||||||||||||||||||||    
T  24686571 ttaatcagtgtctcgaaagtacttgttaaggaaacaaatataatagtttttacatcgaaaattgtgtaatcaatttctcaaaagtcaaaaaagta 24686665  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 6254318 - 6254389
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagta 200  Q
    ||||||||||| ||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||    
T  6254318 ggttaaggaaacaaatatagtagcttttgcatcgaaaactgtgtaatcaatttttcaaaagtcaaaaaagta 6254389  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 36696640 - 36696573
Alignment:
Q  132 taaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    |||||||| |||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||    
T  36696640 taaggaaacaaatatagtagtttttgcatcgaaaaatgtgtaatcaatttgtcaaaagtcaaaaaagt 36696573  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 11597626 - 11597691
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaa 194  Q
    |||||||| | ||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||    
T  11597626 ggttaaggtagtaaatatagtagtttttgcatcgaaaattatataattaatttctcaaaagtcaaa 11597691  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 27422639 - 27422571
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||||||| ||| |||||||||||||||||||||| ||| ||||||||   |||||||||||||||    
T  27422639 ggttaaggaaacaaacatagtagtttttgcattgaaaattgtgtaatcaatgcttcaaaagtcaaaaaa 27422571  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 31943567 - 31943637
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    |||||||||| |||||| ||||||||||| || | |||  ||||||||||||| |||||||||||||||||    
T  31943567 ggttaaggaagtaaatacagtagtttttgtatcggaaatcgtataatcaatttatcaaaagtcaaaaaagt 31943637  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 33124623 - 33124567
Alignment:
Q  143 atatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||| |||||||||||| ||| |||||||||| | |||||||||||||||    
T  33124623 atatagtagttattgcattgaaaattgtgtaatcaatttataaaaagtcaaaaaagt 33124567  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 40737061 - 40737128
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaa 196  Q
    ||||||||||  |||||||||||||||||||| | |||  || |||||||||| ||||||||||||||    
T  40737061 ggttaaggaagcaaatatagtagtttttgcatcggaaatcgtgtaatcaatttatcaaaagtcaaaaa 40737128  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 15552970 - 15553040
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||  ||||||||||  |||||||||||||| ||||||||||||   || ||||||||||||||    
T  15552970 ggttaaggaagcaaatatagtaacttttgcattgaaaattgtataatcaatgcttctaaagtcaaaaaagt 15553040  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 42056335 - 42056269
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaa 195  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  42056335 ggttaaggaaacaaatatagtagtttttgcatcgaaaactgtgtaattaatttctcaaaagtcaaaa 42056269  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 55826303 - 55826378
Alignment:
Q  124 gtacaggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    |||| ||||||||||| ||||||||||||||||| || | ||| ||| ||||||||||||||||| | ||||||||    
T  55826303 gtactggttaaggaaacaaatatagtagtttttgtatcggaaattgtgtaatcaatttctcaaaaataaaaaaagt 55826378  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 38376843 - 38376913
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||| ||||||| |||||||||||| ||||| ||| |||| ||||| |||||| ||||||||||    
T  38376843 ggttaaggaaacaaatatattagtttttgcatcgaaaattgtgtaattaatttttcaaaaatcaaaaaagt 38376913  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 49030434 - 49030482
Alignment:
Q  131 ttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaat 179  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  49030434 ttaaggaaacaaatataatagtttttgcattgaaaattgtataatcaat 49030482  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 55762502 - 55762570
Alignment:
Q  131 ttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||| ||||||||||||||||| || | ||| ||| ||||||||||||||||| | ||||||||    
T  55762502 ttaaggaaacaaatatagtagtttttgtatcggaaattgtgtaatcaatttctcaaaaataaaaaaagt 55762570  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 21444014 - 21443959
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaa 196  Q
    ||||||||||| |||||||| |||| |||| ||||||||||||||||||| |||||    
T  21444014 aaatatagtagcttttgcatcgaaagctgtgtaatcaatttctcaaaagtaaaaaa 21443959  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 5459232 - 5459303
Alignment:
Q  130 gttaaggaaataaatatagtagtttttgcattg--aaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||| ||||||||||||||||||||| |  |||| ||| |||| ||||||| |||||| ||||||||    
T  5459232 gttaaggaagtaaatatagtagtttttgcatcgaaaaaattgtgtaattaatttcttaaaagttaaaaaagt 5459303  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 21864566 - 21864616
Alignment:
Q  147 agtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||||||| |||| ||| ||| ||||||||||||||||||| ||||||    
T  21864566 agtagtttttgtattggaaattgtgtaatcaatttctcaaaagtaaaaaaa 21864616  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 21920427 - 21920477
Alignment:
Q  147 agtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||||||| |||| ||| ||| ||||||||||||||||||| ||||||    
T  21920427 agtagtttttgtattggaaattgtgtaatcaatttctcaaaagtaaaaaaa 21920477  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 37012549 - 37012590
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgt 170  Q
    ||||||||||  |||||||||||||||||||| |||||||||    
T  37012549 ggttaaggaagcaaatatagtagtttttgcatcgaaaactgt 37012590  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 40320068 - 40319996
Alignment:
Q  128 aggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagta 200  Q
    |||||||| ||  ||||||| || ||||||||||||||  ||| |||||||||  | ||||||||||||||||    
T  40320068 aggttaagaaagcaaatataataatttttgcattgaaatttgtgtaatcaattctttaaaagtcaaaaaagta 40319996  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 51206206 - 51206148
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||    
T  51206206 aaatatagtagcttttgcatcgaaaactgtgtaatcaatttctcaaaggtcaaaaaagt 51206148  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 34681224 - 34681292
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||||||| ||||||||||  |||| ||| ||||| ||| ||||||||||||||||||||||||||    
T  34681224 ggttaaggaaacaaatatagtatcttttacatcgaaaattgtttaatcaatttctcaaaagtcaaaaaa 34681292  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 42841828 - 42841761
Alignment:
Q  132 taaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    |||||||  ||||||| ||| |||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  42841828 taaggaagcaaatatactagcttttacatcgaaaactgtgtaatcaatttctcaaaagtcaaaaaagt 42841761  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 43261040 - 43260982
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||  ||||||||| |||||| | ||||||||||||||||||| ||||||||    
T  43261040 aaatatagtaacttttgcatttaaaactatgtaatcaatttctcaaaagtaaaaaaagt 43260982  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 52474464 - 52474398
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaa 196  Q
    ||||||||||| ||||||||| |||||||||| |||||||||  ||| |||||||| ||||| |||||    
T  52474464 ggttaaggaaacaaatatagt-gtttttgcatcgaaaactgtgcaattaatttctctaaagttaaaaa 52474398  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 16464105 - 16464175
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||  ||||||||||| ||||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  16464105 ggttaaggaagcaaatatagtagcttttgtattggaaattgtgtaatcaatttctcaaaagtcaaaaaagt 16464175  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 28429054 - 28428984
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||  ||||||||||||||||| || ||||||||| | ||||||||||||||| ||||||||||    
T  28429054 ggttaaggaagcaaatatagtagtttttgtatcgaaaactgtgttatcaatttctcaaaaatcaaaaaagt 28428984  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 14941735 - 14941666
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||  ||||||||||| |||| ||||||||| ||| |||||||||| |||||||||||||||||    
T  14941735 ggttaaggaagcaaatatagtagcttttacattgaaaattgtgtaatcaattt-tcaaaagtcaaaaaagt 14941666  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 20557320 - 20557253
Alignment:
Q  130 gttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    |||||||||||||||||| |||||| ||| | ||  | ||| ||||||||||||| ||||||||||||    
T  20557320 gttaaggaaataaatataatagtttgtgcttagattattgtgtaatcaatttctctaaagtcaaaaaa 20557253  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 15239136 - 15239066
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    |||||||||| ||||||||| | |||||||||| |||||| | |||| ||  | |||||||||||||||||    
T  15239136 ggttaaggaagtaaatatagaaatttttgcatttaaaactatgtaattaagatttcaaaagtcaaaaaagt 15239066  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 39704 - 39636
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||| || ||||||||||||||||||||||||||| | || ||| ||||| |||||||||||||||    
T  39704 ggttaagaaagtaaatatagtagtttttgcattgaaaattatacaattaatttttcaaaagtcaaaaaa 39636  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 29127384 - 29127329
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaa 196  Q
    |||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||    
T  29127384 aaatatagtagtttttgcatcggaaattgtgtaatcaatttctcaaaagtcaaaaa 29127329  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 2736784 - 2736842
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||||||||||||  |||| ||| |||| ||||| |||||||||||||||||    
T  2736784 aaatatagtagtttttgcatcaaaaattgtgtaattaatttttcaaaagtcaaaaaagt 2736842  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 40236774 - 40236830
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||||||| |||||||||||||| ||| ||||||||   |||||||||||||||    
T  40236774 aaatatagtagcttttgcattgaaaattgtgtaatcaatacttcaaaagtcaaaaaa 40236830  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 5546986 - 5546948
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaat 179  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  5546986 aaatatagtaatttttgcattgaaaattgtataatcaat 5546948  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 21809692 - 21809762
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||| | ||||||||  ||||| |||||||| ||| |||||||||| |||||||||||||||||    
T  21809692 ggttaaggaaacagatatagtaacttttgtattgaaaattgtgtaatcaatttttcaaaagtcaaaaaagt 21809762  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 6802244 - 6802200
Alignment:
Q  155 ttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    |||||||||||| |||||||||||||  | |||||||||||||||    
T  6802244 ttgcattgaaaattgtataatcaattcataaaaagtcaaaaaagt 6802200  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 8008315 - 8008385
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||| ||||||||| ||||||||||| |||||||| ||| |||| || || |||||||||||||||||    
T  8008315 ggttaagaaaataaatacagtagtttttgtattgaaaattgtgtaattaacttttcaaaagtcaaaaaagt 8008385  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 27299816 - 27299760
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||||||| ||||| || | ||| ||| ||||||||||||||||||||||||||    
T  27299816 aaatatagtagcttttgtatgggaaattgtgtaatcaatttctcaaaagtcaaaaaa 27299760  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 47312121 - 47312052
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||| ||||||||||| |||||||| ||||||||| |||||| |||||||||| | ||||||||    
T  47312121 ggttaaggaaacaaatatagtag-ttttgcatcgaaaactgtgtaatcagtttctcaaaaataaaaaaagt 47312052  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 15351141 - 15351187
Alignment:
Q  153 ttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  15351141 ttttgcatcgaaaactgtgtaatcaatttctcaaaagtaaaaaaagt 15351187  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 39097071 - 39097141
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagt 199  Q
    ||||||||||  ||||||||||| |||| |||| |||| ||| |||| ||||||| |||||||||||||||    
T  39097071 ggttaaggaagcaaatatagtagcttttacattaaaaattgtgtaattaatttctgaaaagtcaaaaaagt 39097141  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 20354391 - 20354459
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    |||||||||| || ||||||||||||||| |||| ||| ||| ||||||| || |||||||| ||||||    
T  20354391 ggttaaggaagtacatatagtagtttttgtattggaaattgtgtaatcaacttttcaaaagtaaaaaaa 20354459  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 20556515 - 20556447
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    |||||||||| || ||||||||||||||| |||| ||| ||| ||||||| || |||||||| ||||||    
T  20556515 ggttaaggaagtacatatagtagtttttgtattggaaattgtgtaatcaacttttcaaaagtaaaaaaa 20556447  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 38508354 - 38508283
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaagta 200  Q
    ||||||||||  ||||||||||  ||||  |||||||| || ||||||||||| | ||||||||||||||||    
T  38508354 ggttaaggaagcaaatatagtaacttttatattgaaaattgcataatcaattttttaaaagtcaaaaaagta 38508283  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 19068201 - 19068143
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaa 187  Q
    ||||||||||  | ||||||||||||||| |||||||| ||| |||||||||| |||||    
T  19068201 ggttaaggaagcatatatagtagtttttgtattgaaaattgtgtaatcaatttttcaaa 19068143  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 19116091 - 19116033
Alignment:
Q  129 ggttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaatttctcaaa 187  Q
    ||||||||||  | ||||||||||||||| |||||||| ||| |||||||||| |||||    
T  19116091 ggttaaggaagcatatatagtagtttttgtattgaaaattgtgtaatcaatttttcaaa 19116033  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 52435496 - 52435447
Alignment:
Q  130 gttaaggaaataaatatagtagtttttgcattgaaaactgtataatcaat 179  Q
    |||||||||  ||||||| || | ||||||||||||||||||||||||||    
T  52435496 gttaaggaagcaaatataataatatttgcattgaaaactgtataatcaat 52435447  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 14258173 - 14258229
Alignment:
Q  141 aaatatagtagtttttgcattgaaaactgtataatcaatttctcaaaagtcaaaaaa 197  Q
    ||||||||||  ||||| || |||||||||||||| ||||| |||||||| ||||||    
T  14258173 aaatatagtaacttttgtatcgaaaactgtataattaatttttcaaaagtaaaaaaa 14258229  T

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