View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_high_9 (Length: 330)
Name: NF6774_high_9
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 5527643 - 5527929
Alignment:
| Q |
1 |
acttgcaatagagacaaagacaaaacccacaccacacgcgatagattgtgctaaaacgatacctataatatgttgaactcaatccaatcatttaatgttg |
100 |
Q |
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| T |
5527643 |
acttgcaatagagacaaagacaaaacccacaccacacgcgatagattgtgctaaaacgatacctataatatgttgaactcaatccaatcatttaacgttg |
5527742 |
T |
|
| Q |
101 |
atactc-nnnnnnnnnnggtatatacggtataaccgaaagnnnnnnnntatatcaataagtttagtgtctataattcactttttaagttgaataagtgaa |
199 |
Q |
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| T |
5527743 |
atactcttattttttttggtatatacggtataaccgaaagaaaaaaaaaatatcaataagtttagtgtctataattcactttttaagttgaataagtgaa |
5527842 |
T |
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| Q |
200 |
gctccct---cnnnnnnnnnttgaacaagtgaggtgttttgggttttaacccagaccccgacattttattttggtaatgacatgaga |
283 |
Q |
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| T |
5527843 |
gctccctaaaaaaaaaaaaattgaacaagtgaggtgttttgggttttaacccaaaccccgacattttattttggtagtgacatgaga |
5527929 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 11172441 - 11172409
Alignment:
| Q |
162 |
tagtgtctataattcactttttaagttgaataa |
194 |
Q |
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| T |
11172441 |
tagtgactataattcactttttaagttgaataa |
11172409 |
T |
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