View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_1 (Length: 891)
Name: NF6774_low_1
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 689; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 14 - 859
Target Start/End: Complemental strand, 28130596 - 28129733
Alignment:
| Q |
14 |
ggacatcatcgagtatggaacgaaggtcaaatggaaccgcttccagctctaatttgccagcttcaatttttgctcggccatac----------------- |
96 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
28130596 |
ggacatcatcgagtatggaacgaaggtcaaatggaaccgcttccagctctaatttgccagcttcaatttttgctcggtcaagcacttcgtttaatcagag |
28130497 |
T |
|
| Q |
97 |
ctttcccacatgcttgagcggtctgagcatagtcacgttgggttgagttcaattccgtgtagaagcagaccaagcattcctacaatcatacagagttttg |
196 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28130496 |
ccttcccacatgcttgagcggtctgagcatagtcacgttgggttgagttcaattccgtgtagaagcagaccaagcattcctacaatcatacagagttttg |
28130397 |
T |
|
| Q |
197 |
ttttgtgataacattattaatgagaaagtgaaaggtatgaaagcatatgttacattttaggcnnnnnnnnnnnnnnnnnnnnnatcttggagttacctaa |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28130396 |
ttttgtgataacattattaatgagaaagtgaaaggtatgaaagcatatgttacattttaggcagagagagagagagagagagaatcttggagttacctaa |
28130297 |
T |
|
| Q |
297 |
aatgccattcataggtattctaatttcatgagagacagtagctagaaactgacataaaaaacaaaatttcagtattagttattgttgcgtaatcaaagga |
396 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28130296 |
aatgccattcataggtgttctaatttcatgagagacagtagctagaaactgacataaaaaacaaaatttcagtattagttattgttgcgtaatcaaagaa |
28130197 |
T |
|
| Q |
397 |
aatatcgaaatatgccaagtgccaacgacatgtcaaggaaaagtacctgtgacttagcaacatcgtctgcctctgctcgaacttttagctcctgcatttc |
496 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28130196 |
aatatcgaaatatgccaagtgccaacgacatgtcaaggaaaagtacctgtgacttagcaacatcggctgcctctgctcgaacttttagctcctgcatttc |
28130097 |
T |
|
| Q |
497 |
gtggaaatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaaaaatcacaaagaataggattgcaatagaaagt |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
28130096 |
gtggaaatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaagaatcacaaagaataggattgcagtagaaagt |
28129997 |
T |
|
| Q |
597 |
gctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaa-tcagttccagaaaatg |
695 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28129996 |
gctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaagtcagttccagaaaatg |
28129897 |
T |
|
| Q |
696 |
taatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaattcaagcttactttcatggacaagagaaacatcac |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28129896 |
taatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaaatcaagcttactttcatggacaagagaaacatcac |
28129797 |
T |
|
| Q |
796 |
cttcttcgtattggttgccatacatgattaggggatcagtagaattcgtgacatcgtatacatt |
859 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
28129796 |
cttcttcgtattggttgccatacatgattaggggatcagtagagttcgtgacatcatatacatt |
28129733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 99 - 877
Target Start/End: Original strand, 44821119 - 44821890
Alignment:
| Q |
99 |
ttcccacatgcttgagcggtctgagcatagtcacgttgggttgagttcaattccgtg--tagaagcagaccaagcattcctacaatcatacagagttttg |
196 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821119 |
ttcccacatgcttgagcagtctgagcatagtcccgttgagttgagttcaattccgtgcgtagaagcagaccaagcattcctacaatcatacagagttttg |
44821218 |
T |
|
| Q |
197 |
ttttgtgataacattattaatgagaaagtgaaaggtatgaaagcatatgttacattttaggcnnnnnnnnnnnnnnnnnnnnnatcttggagttacctaa |
296 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| || ||| |||||||||| |
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| T |
44821219 |
ttttgtgataacattattaatgagcaagtgaaagctatgaaagcatatgttacatgttaggcaaagagagagaga--------attttgcagttacctaa |
44821310 |
T |
|
| Q |
297 |
aatgccattcataggtattctaatttcatgagagacagtagctagaaactgacataaaaaacaaaatttcagtattagttattgttgcgtaatcaaagga |
396 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
44821311 |
aatgccattcataggtgttctaatttcatgagagacagtagctagaaactgacaaaaacaa--aaatttcagtattagttattgttgcgtaatcaaagga |
44821408 |
T |
|
| Q |
397 |
aatatcgaaatatgccaagtgccaacgacatgtcaaggaaaagtacctgtgacttagcaacatcgtctgcctctgctcgaacttttagctcctgcatttc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44821409 |
aatatcgaaatatgccaagtgccaacgacatgtcaaggaaaagtacctgtgacttggcaacatcggctgcctctgctcgaacttttagctcctgcatttc |
44821508 |
T |
|
| Q |
497 |
gtggaaatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaaaaatcacaaagaataggattgcaatagaaagt |
596 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |
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| T |
44821509 |
gtggaaatcatcctctactttgacaatatgattcccagcaccatataaaatgtaaccgattaaaagaagaatcacaaagaataggattgcagtagaaagt |
44821608 |
T |
|
| Q |
597 |
gctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaa-tcagttccagaaaatg |
695 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44821609 |
gctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaagtcagttccagaaaatg |
44821708 |
T |
|
| Q |
696 |
taatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaattcaagcttactttcatggacaagagaaacatcac |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
44821709 |
taatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaaatcaagcttactttcatggacaagagaaacatcac |
44821808 |
T |
|
| Q |
796 |
cttcttcgtattggttgccatacatgattaggggatcagtagaattcgtgacatcgtatacattgaccaaaattgcttgatg |
877 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
44821809 |
cttcttcgtattggttgccatacatgattaggggatcagaagagttcgtgacatcatatacattgaccaaaattgcttgatg |
44821890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 44821009 - 44821085
Alignment:
| Q |
14 |
ggacatcatcgagtatggaacgaaggtcaaatggaaccgcttccagctctaatttgccagcttcaatttttgctcgg |
90 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821009 |
ggacatcatcgagtatggaacgaaggtcaaatggaaccgcttccagctctaatttgccagcttcaatttttgctcgg |
44821085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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