View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_11 (Length: 386)
Name: NF6774_low_11
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 365
Target Start/End: Complemental strand, 52484507 - 52484167
Alignment:
| Q |
2 |
agaaacaagttccccacccccatgatatttatttatttatcaactttttt-ctcctttcttctgactacatgactaagacgtaaatggtgattttccttt |
100 |
Q |
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| T |
52484507 |
agaaacaagttccccacccccatgatatttatttatttatcaactttttttctcctttcttctgactacatgacta-gacgtaaatggtgattttccttt |
52484409 |
T |
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| Q |
101 |
ctctatttacacccccaccctacattgtcttcactcttcagtcagtgttgaagctcgatctcaacgcaaaaaccctccaaattaagaaattaacaacgat |
200 |
Q |
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| T |
52484408 |
ctctatttacaccc---------------ttcactcttcagt----gttgaaggtc----tcaacgcaaaaaccctccaaattaagaaattaacaacgat |
52484332 |
T |
|
| Q |
201 |
ggcagacccaacaactttcatagcaacatggttcacaccttcttctattttcatcattgtaaaccttgtcataggtaccatagctctagcttctcgcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52484331 |
ggcagacccaacaactttcatagcaacatggttcacaccttcttctattttcatcattgtaaaccttgtcataggtaccatagctctagcttctcgcttc |
52484232 |
T |
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| Q |
301 |
aatggtccacccaaaaacgaccaaatccaacaacctcaactcaatcgttcaccttcacttctcaa |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52484231 |
aatggtccacccaaaaacgaccaaatccaacaacctcaactcaatcgttcaccttcacttctcaa |
52484167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 52464962 - 52464891
Alignment:
| Q |
229 |
tggttcacaccttcttctattttcatcattgtaaaccttgtcataggtaccatagctctagcttctcgcttc |
300 |
Q |
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||||||||||| ||| || |||||||| |||| ||||||||||| |||||||| ||||| | |||||||||| |
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| T |
52464962 |
tggttcacaccctctcctcttttcatctttgttaaccttgtcattggtaccattgctctcgtttctcgcttc |
52464891 |
T |
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