View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_14 (Length: 358)
Name: NF6774_low_14
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 65 - 340
Target Start/End: Complemental strand, 5922627 - 5922364
Alignment:
| Q |
65 |
aagcaatttgaacttgttagtagtaacatagttttcttctaatgatcataatagcatgcaccgtccatgggaactttaaattcaccaagtatcaaaactt |
164 |
Q |
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| T |
5922627 |
aagcaatttgaacttgttagtagtaacatagttttcttctaatgatcataatagcatgcaccgtccatgggaactttaaattcaccaagtatcaaaactt |
5922528 |
T |
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| Q |
165 |
ggatattgactcatgttttatatgcattatcatatgcatattctaaaatgtactagtctgttgatctcttgctaatcatggaatgggttgctatgatctt |
264 |
Q |
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| T |
5922527 |
ggatattgactcacgttttatatgcat------------attctaaaacgtactagtctgttgatctcttgctaatcatggaatgggttgctatgatctt |
5922440 |
T |
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| Q |
265 |
ccacctgaatcttttcagagtttgataggcttggttgtagcacaaacttcttttgttgatacttgatgaaagtatt |
340 |
Q |
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| T |
5922439 |
ccacctgaatcttttcagagtttgatagccttggttgtagcacaaacttcttttgttgatatttgatgaaagtatt |
5922364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 5913544 - 5913377
Alignment:
| Q |
66 |
agcaatttgaacttgttagtagtaacatagttttcttctaatgatcataatagcatgcaccgtccatgggaactttaaattcaccaagtatcaaaacttg |
165 |
Q |
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| T |
5913544 |
agcaatttgaacttgttaggagtaacatagttttctcctaatgatcataatagca----ccgtccacgggaacattaaattcaccaagtatcaaaacttg |
5913449 |
T |
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| Q |
166 |
gatattgactcatgttttatatgcattatcatatgcatattctaaaatgtactagtctgttgatctcttgct |
237 |
Q |
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| T |
5913448 |
gacattgactcacgttttatatgcattatcatatacatattgtaaaacgtactagtctgtagatctcttgct |
5913377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 5922702 - 5922658
Alignment:
| Q |
22 |
aacctcaaaagttcaagccctatctttttaccattgaatcttaaag |
67 |
Q |
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| T |
5922702 |
aacctcaaaagttcaagcc-tatctttttaccattggatcttaaag |
5922658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 5913621 - 5913576
Alignment:
| Q |
22 |
aacctcaaaagttcaagccctatctttttaccattgaatcttaaag |
67 |
Q |
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| T |
5913621 |
aacctcaaaagtttaaagcctatctttttaccattggatcttaaag |
5913576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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