View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6774_low_15 (Length: 358)

Name: NF6774_low_15
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6774_low_15
NF6774_low_15
[»] chr3 (2 HSPs)
chr3 (1-305)||(53662249-53662554)
chr3 (18-106)||(33131716-33131804)
[»] chr7 (2 HSPs)
chr7 (1-98)||(39681908-39682005)
chr7 (187-219)||(48411256-48411288)
[»] chr5 (1 HSPs)
chr5 (1-106)||(12574003-12574108)
[»] chr2 (3 HSPs)
chr2 (187-229)||(2511128-2511170)
chr2 (25-103)||(41130317-41130395)
chr2 (188-220)||(9151165-9151197)
[»] chr8 (1 HSPs)
chr8 (186-221)||(15118623-15118658)
[»] chr4 (1 HSPs)
chr4 (187-221)||(41112443-41112477)
[»] chr1 (3 HSPs)
chr1 (31-64)||(35425837-35425870)
chr1 (188-220)||(11229081-11229113)
chr1 (33-85)||(25631667-25631719)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 53662249 - 53662554
Alignment:
Q  1 taacttgcttataagatgatgtgcgactctttaagtgaaccattgtgatggatagaaaatgaaatgccaattatagatgatgcatattaggaaataataa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53662249 taacttgcttataagatgatgtgtgactctttaagtgaaccattgtgatggatagaaaatgaaatgccaattatagatgatgcatattaggaaataataa 53662348  T
Q  101 aaacaannnnnnnn-gtattttcactgtttccgaaaaaatgcatagaattcgttcacttcaagactattatcactttgttcacaagtaaaatgaaaacag 199  Q
    ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53662349 aaacaatttttttttgtattttcactgtttccgaaaaaatgcatagaattcgttcacttcaagactattatcactttgttcacaagtaaaatgaaaacag 53662448  T
Q  200 aaaatgttttcacaaagtaaacatgaccttaacttgttaacttgtaattgttacaaaaagctaatcaagaacatttaaaacatgcagtaatagtatatgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53662449 aaaatgttttcacaaagtaaacatgaccttaacttgttaacttgtaattgttacaaaaagctaatcaagaacatttaaaacatgcagtaatagtatatgt 53662548  T
Q  300 atattt 305  Q
    ||||||    
T  53662549 atattt 53662554  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 33131716 - 33131804
Alignment:
Q  18 gatgtgcgactctttaagtgaaccattgtgatggatagaaaatgaaatgccaattatagatgatgcatattaggaaataataaaaacaa 106  Q
    |||||| ||||| | |||||||||||||| ||| | |||| ||||||| | |  |  ||||||||||| || |||||||||||||||||    
T  33131716 gatgtgagactcctgaagtgaaccattgtaatgaagagaagatgaaatactagatcgagatgatgcatttttggaaataataaaaacaa 33131804  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 39682005 - 39681908
Alignment:
Q  1 taacttgcttataagatgatgtgcgactctttaagtgaaccattgtgatggatagaaaatgaaatgccaattatagatgatgcatattaggaaataat 98  Q
    ||||||||| |||||| |||| | ||||||| || ||||||||||||||||| |||| ||||||||| | ||||||||||||||| || | |||||||    
T  39682005 taacttgctaataagaagatgcgagactcttaaaatgaaccattgtgatggagagaagatgaaatgctagttatagatgatgcatttttgaaaataat 39681908  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 48411288 - 48411256
Alignment:
Q  187 aaaatgaaaacagaaaatgttttcacaaagtaa 219  Q
    |||||||||| ||||||||||||||||||||||    
T  48411288 aaaatgaaaatagaaaatgttttcacaaagtaa 48411256  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 12574108 - 12574003
Alignment:
Q  1 taacttgcttataagatgatgtgcgactctttaagtgaaccattgtgatggatagaaaatgaaatgccaattatagatgatgcatattaggaaataataa 100  Q
    ||||||||| ||||   |||||| ||||||| |||||||||||||||||||| |||| ||||||||| |  ||| |||||||||| |  ||||||||| |    
T  12574108 taacttgctaataattagatgtgagactcttgaagtgaaccattgtgatggagagaagatgaaatgctagctatggatgatgcatttatggaaataatga 12574009  T
Q  101 aaacaa 106  Q
    ||||||    
T  12574008 aaacaa 12574003  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 2511170 - 2511128
Alignment:
Q  187 aaaatgaaaacagaaaatgttttcacaaagtaaacatgacctt 229  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  2511170 aaaatgaaaacagaaaatgttttcataaagtaaacatgacctt 2511128  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 41130395 - 41130317
Alignment:
Q  25 gactctttaagtgaaccattgtgatggatagaaaatgaaatgccaattatagatgatgcatattaggaaataataaaaa 103  Q
    ||||||| || ||||||||||||||||  |||| ||||||||| ||||| ||||||||||| ||  |||||||| ||||    
T  41130395 gactcttgaaatgaaccattgtgatggggagaagatgaaatgctaattagagatgatgcatttttagaaataatgaaaa 41130317  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 9151197 - 9151165
Alignment:
Q  188 aaatgaaaacagaaaatgttttcacaaagtaaa 220  Q
    |||||| ||||||||||||||||||||||||||    
T  9151197 aaatgataacagaaaatgttttcacaaagtaaa 9151165  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 15118658 - 15118623
Alignment:
Q  186 taaaatgaaaacagaaaatgttttcacaaagtaaac 221  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15118658 taaaatgaaaacacaaaatgttttcacaaagtaaac 15118623  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 41112443 - 41112477
Alignment:
Q  187 aaaatgaaaacagaaaatgttttcacaaagtaaac 221  Q
    ||||||||||||||||||||||||| |||||||||    
T  41112443 aaaatgaaaacagaaaatgttttcataaagtaaac 41112477  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 35425870 - 35425837
Alignment:
Q  31 ttaagtgaaccattgtgatggatagaaaatgaaa 64  Q
    |||||||||||||||||||||| |||||||||||    
T  35425870 ttaagtgaaccattgtgatggagagaaaatgaaa 35425837  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 11229113 - 11229081
Alignment:
Q  188 aaatgaaaacagaaaatgttttcacaaagtaaa 220  Q
    ||||||||| |||||||||||||||||||||||    
T  11229113 aaatgaaaatagaaaatgttttcacaaagtaaa 11229081  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 25631719 - 25631667
Alignment:
Q  33 aagtgaaccattgtgatggatagaaaatgaaatgccaattatagatgatgcat 85  Q
    ||||||| |||||||||||| |||| ||||||||| | ||| |||||||||||    
T  25631719 aagtgaatcattgtgatggagagaagatgaaatgctagttaaagatgatgcat 25631667  T

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