View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6774_low_16 (Length: 343)
Name: NF6774_low_16
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 50339106 - 50339284
Alignment:
| Q |
1 |
aagaaggttctttaaacggtgaataactagctagatagacatttagtgtatttatattttgcacaccagaattaagagttattttttgataaaaaagtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
50339106 |
aagaaggttctttaaacggtgaataactagctagatagacatttagtgtatttatattttgcacaccagaattaagagttatttttttat-aaaaagtga |
50339204 |
T |
|
| Q |
101 |
tggctcaatgatgaaaaggttgggtggatattggcagttccgccatatctgtttggattatttgcgatgttttgcttatt |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50339205 |
tggctcaatgatgaaaaggttgggtggatattggcagttccgccatatctgtttggattatttgcgatgttttgcttatt |
50339284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University