View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6774_low_17 (Length: 339)
Name: NF6774_low_17
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_17 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0501 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 21609770 - 21610100
Alignment:
| Q |
8 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21609770 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
21609869 |
T |
|
| Q |
108 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21609870 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttga |
21609969 |
T |
|
| Q |
208 |
tgctgcagtagcagttattaggttttgttttggctggtggctctgtgttcgattttgacgcagggatatgctattgtggccctttgtgtatattcctcgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21609970 |
tgctgcagtagcagttattaggttttgttttggctggtggatctgtgttcgattttgatgcagggatatgctattgtagccctttgtgtatattcctcgc |
21610069 |
T |
|
| Q |
308 |
atcattattgggtcttgtttttggggttttg |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21610070 |
atcattattgggtcttgtttttggggttttg |
21610100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 14814449 - 14814766
Alignment:
| Q |
8 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14814449 |
agatgagtcacacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatataatgcttcagatgagaagaatattttgactactttatttaa |
14814548 |
T |
|
| Q |
108 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
14814549 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcaactatgttcttttgttttggctgtagttga |
14814648 |
T |
|
| Q |
208 |
tgctgcagtagcagttattaggttttgttttggctggtgg--ctctgtgttcgattttgacgcagggatatgctattgtggccctttgtgtatattcctc |
305 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14814649 |
tgctgcagtggcagttattaggttctgttttggctggtggccctttgtgttcgattttgatgcagggatatgctattgtggccctttgtgtatattcctc |
14814748 |
T |
|
| Q |
306 |
gcatcattattgggtctt |
323 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14814749 |
gcatcattattgggtctt |
14814766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 25263 - 24945
Alignment:
| Q |
8 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25263 |
agatgagtcacacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatataatgcttcagatgagaagaatattttgactactttatttaa |
25164 |
T |
|
| Q |
108 |
atatgatgctttagatagttttag-gctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttg |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
25163 |
atatgatgctttagatagttttagagctagttttgtggactatgtgaatgctgcagtttgatattgcagcaactatgttcttttgttttggctgtagttg |
25064 |
T |
|
| Q |
207 |
atgctgcagtagcagttattaggttttgttttggctggtgg--ctctgtgttcgattttgacgcagggatatgctattgtggccctttgtgtatattcct |
304 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25063 |
atgctgcagtggcagttattaggttctgttttggctggtggccctttgtgttcgattttgatgcagggatatgctattgtggccctttgtgtatattcct |
24964 |
T |
|
| Q |
305 |
cgcatcattattgggtctt |
323 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24963 |
cgcatcattattgggtctt |
24945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 48129 - 48459
Alignment:
| Q |
8 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
48129 |
agatgagtcacacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaaaaatattttgactactttgtttaa |
48228 |
T |
|
| Q |
108 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
48229 |
atatgatgctttagatagttttaggctagttttatggaccatgtgaatgctgcagtttgatattgcagcagctatgttcttttgttttagc--ttgttga |
48326 |
T |
|
| Q |
208 |
tgctgcagtagcagttattaggttttgttttggctggtgg--ctctgtgttcgattttgacgcagggatatgctattgtggccctttgtgtatattcctc |
305 |
Q |
| |
|
|||| |||| || ||||||||||| ||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48327 |
tgctacagtggctgttattaggttctgttttggctggtggccctttttgttcgattttgatgcagggatatgctattgtggccctttgtgtatattcctc |
48426 |
T |
|
| Q |
306 |
gcatcattattgggtcttgtttttggggttttg |
338 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
48427 |
gcatcattattgggtcttgttttttgggttttg |
48459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 14902242 - 14902572
Alignment:
| Q |
8 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
14902242 |
agatgagtcacacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaaaaatattttgactactttgtttaa |
14902341 |
T |
|
| Q |
108 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
14902342 |
atatgatgctttagatagttttaggctagttttatggaccatgtgaatgctgcagtttgatattgcagcagctatgttcttttgttttagc--ttgttga |
14902439 |
T |
|
| Q |
208 |
tgctgcagtagcagttattaggttttgttttggctggtgg--ctctgtgttcgattttgacgcagggatatgctattgtggccctttgtgtatattcctc |
305 |
Q |
| |
|
|||| |||| || ||||||||||| ||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14902440 |
tgctacagtggctgttattaggttctgttttggctggtggccctttttgttcgattttgatgcagggatatgctattgtggccctttgtgtatattcctc |
14902539 |
T |
|
| Q |
306 |
gcatcattattgggtcttgtttttggggttttg |
338 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
14902540 |
gcatcattattgggtcttgttttttgggttttg |
14902572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 12931202 - 12931480
Alignment:
| Q |
8 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931202 |
agatgagtcagacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatctgatgcttcagatgagaagaatattttgactactttatttaa |
12931301 |
T |
|
| Q |
108 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
12931302 |
atatgatgctttagatagttttaggctagttttgtggactatgtgaatgctgcagtttgatattgcagcagttatgtccttctgttttggctgttgttga |
12931401 |
T |
|
| Q |
208 |
tgctgcagtagcagttattaggttttgttttggctggtgg--ctctgtgttcgattttgacgcagggatatgctattgt |
284 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| || || |||||||||||| |||||||||||||||||| |
|
|
| T |
12931402 |
tgctgcagtggcagttattaggttctgttttggctggtggccctttgcgttcgattttgatgcagggatatgctattgt |
12931480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 12931510 - 12931552
Alignment:
| Q |
294 |
tgtatattcctcgcatcattattgggtcttgtttttggggttt |
336 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12931510 |
tgtatattcctcacatcattattgggtcttgtttttggggttt |
12931552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 31775637 - 31775359
Alignment:
| Q |
8 |
agatgagtcaaacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775637 |
agatgagtcagacaatcccaacattgaggaggatgaaagtgatgacaccaattaaatatgatgcttcagatgagaagaatattttgactactttatttaa |
31775538 |
T |
|
| Q |
108 |
atatgatgctttagatagttttag-gctagttttgtggactatgtgaatgctgcagtttgatattgcagcagctatgttcttctgttttggctgttgttg |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
31775537 |
atatgatgctttagatagttttagagctagttttgtggactatgtgaatgctgcagtttgatattgcagcagttatgttcttctgttttggctgttgctg |
31775438 |
T |
|
| Q |
207 |
atgctgcagtagcagttattaggttttgttttggctggtgg--ctctgtgttcgattttgacgcagggatatgctattgt |
284 |
Q |
| |
|
| | |||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
31775437 |
a-gttgcagtggcagttattaggttctgttttggctggtggccctttgtgttcgattttgatgcagggatatgcaattgt |
31775359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 31775329 - 31775287
Alignment:
| Q |
294 |
tgtatattcctcgcatcattattgggtcttgtttttggggttt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775329 |
tgtatattcctcgcatcattattgggtcttgtttttggggttt |
31775287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0501 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0501
Description:
Target: scaffold0501; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 12056 - 12020
Alignment:
| Q |
302 |
cctcgcatcattattgggtcttgtttttggggttttg |
338 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
12056 |
cctcgcatcattattgagtcttgttttttgggttttg |
12020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University