View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_18 (Length: 335)
Name: NF6774_low_18
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 35205347 - 35205651
Alignment:
| Q |
12 |
tcatcaaattcttgcaagacattaataagtttccgcgctttcttctccgcttgaggagtaccatcggtaagatttgcataaagcaaaggcataatccccg |
111 |
Q |
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| T |
35205347 |
tcatcaaattcttgcaagacattaataagtttccgcgctttcttctccgcttgaggagtaccatcggtaagatttgcataaagcaaaggcataatccccg |
35205446 |
T |
|
| Q |
112 |
aagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagtgaaaccaaaatggaaacacagtactccttctccgcactcgaatttgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35205447 |
aagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagtgaaaccaaaatggaaacacagtactccttctccgcacgcgaatttgc |
35205546 |
T |
|
| Q |
212 |
agattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcacgagcaccatccacattctccgccaatgctaccaaaaccgctaaacaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35205547 |
agattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcacgagcaccatccacattctccgccaatgctaccaaaaccgctaaacaa |
35205646 |
T |
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| Q |
312 |
tcatt |
316 |
Q |
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||||| |
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| T |
35205647 |
tcatt |
35205651 |
T |
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