View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6774_low_20 (Length: 328)

Name: NF6774_low_20
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6774_low_20
NF6774_low_20
[»] chr3 (2 HSPs)
chr3 (9-318)||(19607165-19607474)
chr3 (150-284)||(4576624-4576755)
[»] chr1 (1 HSPs)
chr1 (26-318)||(32604599-32604888)
[»] chr2 (3 HSPs)
chr2 (26-318)||(21022890-21023179)
chr2 (150-284)||(7230748-7230879)
chr2 (150-284)||(7230422-7230553)
[»] chr8 (3 HSPs)
chr8 (26-318)||(24956496-24956785)
chr8 (26-318)||(18176326-18176615)
chr8 (150-247)||(29564540-29564634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (150-276)||(175922-176045)
[»] chr4 (2 HSPs)
chr4 (150-276)||(14641247-14641370)
chr4 (150-284)||(26110691-26110822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (150-247)||(131180-131274)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 19607474 - 19607165
Alignment:
Q  9 atggacatcaactttaagtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607474 atggacatcaactttaagtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgat 19607375  T
Q  109 attggtgaccaatttatccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19607374 attggtgaccaatttatccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaattgagagaaagtgacaaagggaaaggcaa 19607275  T
Q  209 aggttgggacgacaacaactatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctc 308  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19607274 aggttgggacgacaacaactatgagaaacacatttgagcggttaactgaagcatctgaaggtcataatgaagttgaaaaggctcaaattgcggtcacctc 19607175  T
Q  309 tgatgtccat 318  Q
    | ||||||||    
T  19607174 taatgtccat 19607165  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 284
Target Start/End: Complemental strand, 4576755 - 4576624
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 249  Q
    |||| ||||||| ||||||||||||||    || | |||||| |||||||| ||  |||||| |||||| |||||||||||||||| |||||||||||      
T  4576755 aaagaaaagaaatgtttcaccagatatg---ggtgtgaaagttacaaagggtaagacaaaggctgggactacaacaactatgagaatcacatttgagcga 4576659  T
Q  250 ttaactgaagcatctgaaggtcataatgaagttga 284  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  4576658 ttagttcaagcagcagaaggtcataatgaaattga 4576624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 318
Target Start/End: Original strand, 32604599 - 32604888
Alignment:
Q  26 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 125  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  32604599 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 32604698  T
Q  126 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 225  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  32604699 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 32604795  T
Q  226 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 318  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  32604796 actatgagaaaaacatttgagcggttagttaaagcagatgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 32604888  T

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Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 26 - 318
Target Start/End: Complemental strand, 21023179 - 21022890
Alignment:
Q  26 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 125  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||     
T  21023179 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttaatattggtgaccactttag 21023080  T
Q  126 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 225  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  21023079 ccctatggaatatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 21022983  T
Q  226 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 318  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  21022982 actatgagaaaaacatttgagcggttagtttaagcagttgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 21022890  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 7230748 - 7230879
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 249  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230748 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230844  T
Q  250 ttaactgaagcatctgaaggtcataatgaagttga 284  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230845 ttagttcaagcatcagaatgtcataatgaaattga 7230879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 7230422 - 7230553
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 249  Q
    |||| ||| ||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230422 aaagaaaaaaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230518  T
Q  250 ttaactgaagcatctgaaggtcataatgaagttga 284  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230519 ttagttcaagcatcagaatgtcataatgaaattga 7230553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 26 - 318
Target Start/End: Original strand, 24956496 - 24956785
Alignment:
Q  26 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 125  Q
    |||| |||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  24956496 gtgtaccatttgaatctagtgacaaaaatactactacagatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 24956595  T
Q  126 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 225  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   ||||| |||||||||||||||||| ||||||||||||||  |||||    
T  24956596 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccatatat---tggagtgaaagtgacaaagggaaaggcaaaggttgggacttcaaca 24956692  T
Q  226 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 318  Q
    | ||||||||| |||||||||| ||||  ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  24956693 attatgagaaaaacatttgagcggttagttgaagcagctgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 24956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 26 - 318
Target Start/End: Complemental strand, 18176615 - 18176326
Alignment:
Q  26 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 125  Q
    ||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  18176615 gtgtgccatttgattgtagtggcaaaaatactactacagatgtgccacaagaaataattgactccgatgatagtgaatttgatattggtgaccactttag 18176516  T
Q  126 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 225  Q
    |||| ||||||||||| ||||||||||| ||||||| |||||||||| |||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  18176515 ccctatggaaaatactcaacccaaaaagaaaagaaaagtttcaccagctat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 18176419  T
Q  226 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 318  Q
    ||||||||||  |||||||||| ||||  ||||||| | ||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||    
T  18176418 actatgagaagaacatttgagcggttagttgaagcagccgaaggtcataatgaagttgaaaaggctcaaattgcagccacctctcatgtccat 18176326  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 29564540 - 29564634
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 247  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||    
T  29564540 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaacaaggttgggactgcaacaacaatgagaaacacatttgagc 29564634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 176045 - 175922
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 249  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  176045 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 175949  T
Q  250 ttaactgaagcatctgaaggtcataat 276  Q
    |||  | ||||| | ||||||||||||    
T  175948 ttagttcaagcagcagaaggtcataat 175922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 14641247 - 14641370
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 249  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  14641247 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 14641343  T
Q  250 ttaactgaagcatctgaaggtcataat 276  Q
    |||  | ||||| | ||||||||||||    
T  14641344 ttagttcaagcagcagaaggtcataat 14641370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 26110691 - 26110822
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 249  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||      
T  26110691 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagatcaaggttgggactgcaacaacgatgagaaacacatttgagcga 26110787  T
Q  250 ttaactgaagcatctgaaggtcataatgaagttga 284  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  26110788 ttagttcaagcagcagaaggtcataatgaaattga 26110822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 131180 - 131274
Alignment:
Q  150 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 247  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||| | ||  | |||||||||||  |||||||||||||||||||||||||||    
T  131180 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagtgtaagaccaaggttgggactgcaacaactatgagaaacacatttgagc 131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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