View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_29 (Length: 242)
Name: NF6774_low_29
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 7153705 - 7153850
Alignment:
| Q |
1 |
cgtttgaccagtctctactaacaccattctccacaattaacaaattcattaactcattcacaagtgggattccttcaggtgtaatatattgcttgttgag |
100 |
Q |
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| T |
7153705 |
cgtttgaccagtctctactaacaccattctccacaattaacaaattcattaactcattcacaagtgggattccttcaggtgtaatatattgcttgttgag |
7153804 |
T |
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| Q |
101 |
aagcgtattgagaatttgcatgaccctaggttgcaattatgcaaat |
146 |
Q |
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| T |
7153805 |
aagcgtattgagaatttgcatgaccctaggctgcaattatgcaaat |
7153850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 13237327 - 13237472
Alignment:
| Q |
1 |
cgtttgaccagtctctactaacaccattctccacaattaacaaattcattaactcattcacaagtgggattccttcaggtgtaatatattgcttgttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237327 |
cgtttgaccagtctctactaacaccattctccacaattaacaaattcattaactcattcacaagtgggattccttcaggtgtaatatattgcttgttgag |
13237426 |
T |
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| Q |
101 |
aagcgtattgagaatttgcatgaccctaggttgcaattatgcaaat |
146 |
Q |
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| T |
13237427 |
aagcgtattgagaatttgcatgaccctaggctgcaattatgcaaat |
13237472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 8704801 - 8704875
Alignment:
| Q |
37 |
ttaacaaattcattaactcattcacaagtgggattccttcaggtgtaatatattgcttgttgagaagcgtattga |
111 |
Q |
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| T |
8704801 |
ttaacaatttcattaactcattcacaagagggatcccattaggtgcaatatattgtttgtcaagaagcgtattga |
8704875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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