View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6774_low_30 (Length: 240)
Name: NF6774_low_30
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_30 |
 | |
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| [»] scaffold0006 (1 HSPs) |
| | |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6965174 - 6965395
Alignment:
| Q |
1 |
ctcattatactaagtcagttggatttgggatatcaattaaaaatagtcatcgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaag |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
6965174 |
ctcattatgctaagtcagttggatttgggatatcaattagaaatagtcatcgttcaaagatttctagagagtttattgatgtaagttatgcttgcacaag |
6965273 |
T |
|
| Q |
101 |
atacggcaagaagcgagaatccaattcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaa |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6965274 |
atacggcaagaagcgagaatccagttcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaa |
6965373 |
T |
|
| Q |
201 |
tggattgttcatagcttcatta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
6965374 |
tggattgttcatagcttcatta |
6965395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 56107902 - 56108123
Alignment:
| Q |
1 |
ctcattatactaagtcagttggatttgggatatcaattaaaaatagtcatcgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaag |
100 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
56107902 |
ctcattatgctaaatcagttgggtttgggatatcaattaaaaatagtcgtcgttcaaagatttctagagagtttattgatgtaagttatgcttgcacaag |
56108001 |
T |
|
| Q |
101 |
atacggcaagaagcgagaatccaattcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaa |
200 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56108002 |
atacggcaagaagcgagaatccagttcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaa |
56108101 |
T |
|
| Q |
201 |
tggattgttcatagcttcatta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
56108102 |
tggattgttcatagcttcatta |
56108123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 20646832 - 20646703
Alignment:
| Q |
38 |
taaaaatagtcatcgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaagatacggcaagaagcgagaatccaattcacaaaatcca |
137 |
Q |
| |
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||||| ||||| |||||| || |||| || | | ||||||||||| | ||||||||| || ||| | || || || |||||||| | ||||||||||| |
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|
| T |
20646832 |
taaaagtagtcgtcgttcgaaaatttataaacaatttattgatgtgaaatatgcttgcacgagacatggtaaaaaacgagaatcgacggcacaaaatcca |
20646733 |
T |
|
| Q |
138 |
cgtccttgtttgaaggtgggatgtgaggct |
167 |
Q |
| |
|
|||||| ||||||||||| ||||| |||| |
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|
| T |
20646732 |
cgtcctcttttgaaggtggaatgtggggct |
20646703 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26013669 - 26013890
Alignment:
| Q |
1 |
ctcattatactaagtcagttggatttgggatatcaattaaaaatagtcatcgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaag |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || || |
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| T |
26013669 |
ctcattatgctaagtcagttgggtttgggatatcaattaaaaatagctgtcgttcaaagatttctagagagtttattgatgtaagttatgcttgcacgag |
26013768 |
T |
|
| Q |
101 |
atacggcaagaagcgagaatccaattcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaa |
200 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26013769 |
atacggcaagaagcgagaatctagttcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttatgtgttaaaagaatttgtgatggaaaa |
26013868 |
T |
|
| Q |
201 |
tggattgttcatagcttcatta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26013869 |
tggattgttcatagcttcatta |
26013890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13863379 - 13863602
Alignment:
| Q |
1 |
ctcattatactaagtcagttggatttgggatatcaattaaaaatagtcatcgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaag |
100 |
Q |
| |
|
|||||| | ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || || |
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| T |
13863379 |
ctcattttgctaaggcagttggatttgagatatcaattaaaaatagttcccgttcaaagatttctagagagtttattgatgtaagttatgcttgcacgag |
13863478 |
T |
|
| Q |
101 |
atac--ggcaagaagcgagaatccaattcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaa |
198 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| || |||||||| | |
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|
| T |
13863479 |
atacacggcaagaagcgagaatccaattcacaaaatccacgtccttatttgaaggtgggatgcgaggctagtttacgtattaaaaaaaattgtgatgcga |
13863578 |
T |
|
| Q |
199 |
aatggattgttcatagcttcatta |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
13863579 |
aatggattgttcatagcttcatta |
13863602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 26398123 - 26397924
Alignment:
| Q |
21 |
ggatttgggatatcaattaaaaatagtcatcgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaagatacggcaagaagcgagaat |
120 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||||| ||||||||| | ||||||||||| | ||||||||| |||||||| || || || ||||| | |
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|
| T |
26398123 |
ggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagt |
26398024 |
T |
|
| Q |
121 |
ccaattcacaaaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcat |
220 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |||||||||| | |||| | ||||||||| ||||||||||||||| | || ||| ||||||| |
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|
| T |
26398023 |
cgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggcttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcat |
26397924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 25830566 - 25830479
Alignment:
| Q |
135 |
ccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcatta |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| | |||| || ||| ||||||||||||||||||||||||| |||| |
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|
| T |
25830566 |
ccacgtccttgtttgaaggtggattgtgaggccagcttacgcatcaaaataaattgcaatggaaaatggattgttcatagcttaatta |
25830479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 277488 - 277336
Alignment:
| Q |
51 |
cgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaagatacggcaagaagcgagaatccaattcacaaaatccacgtccttgtttga |
150 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||| | ||||||||| |||||||| || || || ||||| || | |||||||||||||||||||||||| |
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|
| T |
277488 |
cgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagtcgaccgcacaaaatccacgtccttgtttga |
277389 |
T |
|
| Q |
151 |
aggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatgg |
203 |
Q |
| |
|
|||||| |||||||||| | |||| | ||||||||| ||||||||||||||| |
|
|
| T |
277388 |
aggtggaatgtgaggctggcttacatattaaaagaagatgtgatggaaaatgg |
277336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 30378 - 30226
Alignment:
| Q |
51 |
cgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaagatacggcaagaagcgagaatccaattcacaaaatccacgtccttgtttga |
150 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||| | ||||||||| |||||||| || || || ||||| || | |||||||||||||||||||||||| |
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|
| T |
30378 |
cgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagtcgaccgcacaaaatccacgtccttgtttga |
30279 |
T |
|
| Q |
151 |
aggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatgg |
203 |
Q |
| |
|
|||||| |||||||||| | |||| | ||| ||||| ||||||||||||||| |
|
|
| T |
30278 |
aggtggaatgtgaggctggcttacatattagaagaagatgtgatggaaaatgg |
30226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 33001939 - 33002110
Alignment:
| Q |
51 |
cgttcaaagatttctagagagtttattgatgtaagatatgcttgaacaagatacggcaagaagcgagaatccaattcacaaaatccacgtccttgtttga |
150 |
Q |
| |
|
||||||||| |||||| || ||||||||||| | |||||||| |||||||| || || ||| ||| ||||| || | || |||||||||||||||| |
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|
| T |
33001939 |
cgttcaaaggtttctacggaatttattgatgtgacttatgcttgcacaagatatggaaaaaagagagcatccacagcagataacccacgtccttgtttga |
33002038 |
T |
|
| Q |
151 |
aggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcatta |
222 |
Q |
| |
|
||||| |||||| || ||||| | |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33002039 |
aggtgaattgtgagatcagcttacgcatcaaaataaattgtgatggaaaatggattgttcatagcttcatta |
33002110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 845911 - 845871
Alignment:
| Q |
127 |
cacaaaatccacgtccttgtttgaaggtgggatgtgaggct |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
845911 |
cacaaaatccacgtccttgtttgaaggtggaatgtggggct |
845871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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