View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_34 (Length: 237)
Name: NF6774_low_34
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 3813338 - 3813524
Alignment:
| Q |
1 |
aaatcgaacttaagacattaagaggtgtgcaatagaaagtcttaagtcaacattactggaccattccaaatggattaacatgtcatcatttattaaggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||| | |||||||||||||||||||||||||||||||||| |
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| T |
3813338 |
aaatcgaacttaagacattaagaggtgtgcaatagaaagtattaagtcaacatcaccgaaccaattcaaatggattaacatgtcatcatttattaaggtg |
3813437 |
T |
|
| Q |
101 |
acacccgactct-gttgtaagagagnnnnnnnngtcaccttaaatatgataatatttaa----atatcatatcaataaatggtgtcact |
184 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3813438 |
acacccgactctctttgtaagaga--aaaaaaagtcaccttaaatatgataatatttaaatatatatcatatcaataaatggtgtcact |
3813524 |
T |
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