View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_4 (Length: 513)
Name: NF6774_low_4
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 21705988 - 21706478
Alignment:
| Q |
13 |
acatcattcttgtcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattccttcacaattttattgggatatgtcccgaa |
112 |
Q |
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| T |
21705988 |
acatcattcttctcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattccttcacaattt-attgggatatgtcccgaa |
21706086 |
T |
|
| Q |
113 |
tactgtcttgcaaagtggccatctcactctttaaaggctcttgttgtgaaggattgtcccaaattggctttgtcatggatctttgtgatgatacgctctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21706087 |
tactgtcttgcaaagtggccatctcactctttaaaggctcttgttgtgaacgattgtcccaaattggctttgtcatggatctttgtgatgatacgctctg |
21706186 |
T |
|
| Q |
213 |
atcatagtcaaaatgaagtatgttctattttgcagaagcataatttatttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaa |
312 |
Q |
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| T |
21706187 |
atcatagtcaaaatgaagtatgttctattttgcagaagcataatttatttaatttcccaaatatgctttataatttcatcaacctttttcattttcagaa |
21706286 |
T |
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| Q |
313 |
cttgcccctaaaactgtacttggatttatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaa |
412 |
Q |
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| T |
21706287 |
cttgcccctaaaactggacttggaattatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagacagactcagagtctccaa |
21706386 |
T |
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| Q |
413 |
tgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtccat |
504 |
Q |
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| T |
21706387 |
tgtctcaagcatttacaagttttacgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtccat |
21706478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 299 - 504
Target Start/End: Complemental strand, 21713191 - 21712986
Alignment:
| Q |
299 |
tttcattttcagaacttgcccctaaaactgtacttggatttatatgatttgcctcagttgaactccatatcatggttgggtcctacaactccaagaaaga |
398 |
Q |
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|||||| |||||||||||||| |||||||| | ||| ||||| ||| ||||||||||||||| |||||||||||| || ||||||| |||||||| ||| |
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| T |
21713191 |
tttcatgttcagaacttgcccttaaaactggagttgtatttacatgttttgcctcagttgaaatccatatcatggcaggatcctacagctccaagacaga |
21713092 |
T |
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| Q |
399 |
ctcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatctgaaatctctattctccatggaggaatctagaagtctaccagagttgat |
498 |
Q |
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| T |
21713091 |
tatggagtctccaatgtctccagtatttaaaagtaggtgattgtgaaaatttgaaatctttgttctccatgaaggaatctagaagtctaccagagttgat |
21712992 |
T |
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| Q |
499 |
gtccat |
504 |
Q |
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|||||| |
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| T |
21712991 |
gtccat |
21712986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 350 - 502
Target Start/End: Original strand, 21709236 - 21709388
Alignment:
| Q |
350 |
cctcagttgaactccatatcatggttgggtcctacaactccaagaaagactcagagtctccaatgtctcaagcatttaaaagttatccgttgtgaaaatc |
449 |
Q |
| |
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||||| |||||| |||||||||||||||||| || |||||||||| | | || |||||||||||||||| ||| || ||| ||| ||||||||||| |
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| T |
21709236 |
cctcaattgaacgccatatcatggttgggtcttataactccaagacaaattcggagtctccaatgtctccagcgttgaaatgttggtgattgtgaaaatc |
21709335 |
T |
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| Q |
450 |
tgaaatctctattctccatggaggaatctagaagtctaccagagttgatgtcc |
502 |
Q |
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| T |
21709336 |
tgaaatctctattctccgtgaaggaatctagaagtctactaaagttgatgtcc |
21709388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 21713543 - 21713334
Alignment:
| Q |
13 |
acatcattcttgtcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattc-cttcacaattttattgggatatgtcccga |
111 |
Q |
| |
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||||||||| | |||| |||||| ||||||| ||||||| |||||||| |||| ||||| ||| | ||| ||| ||||| | |||||||| ||||| || |
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| T |
21713543 |
acatcattcatctcaccaatacctgaaccacaccatgctttctcaactggaagttctcaaactc-agttctcttgacaatctcattgggatgtgtcctga |
21713445 |
T |
|
| Q |
112 |
atactgtcttgcaaagtggccatctcactctttaaaggctcttgttgtgaaggattgtcccaaattggctttgtcatggatctttgtgatgatacgctct |
211 |
Q |
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|||||||| ||| |||||||||||||||||||| | || |||||||||| |||||||||||||||||| | |||| |||||| | | ||||| || ||| |
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| T |
21713444 |
atactgtcatgcgaagtggccatctcactctttgagggatcttgttgtggaggattgtcccaaattggatatgtcgtggatcgctcttatgattcgttct |
21713345 |
T |
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| Q |
212 |
gatcatagtca |
222 |
Q |
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| T |
21713344 |
ggtcatagtca |
21713334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 21709088 - 21709144
Alignment:
| Q |
167 |
tgtcccaaattggctttgtcatggatctttgtgatgatacgctctgatcatagtcaa |
223 |
Q |
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||||| || |||||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
21709088 |
tgtccaaagttggctatgttatggatcgctgtgatgatacgctctgatcatagtcaa |
21709144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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