View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6774_low_6 (Length: 447)
Name: NF6774_low_6
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 173 - 431
Target Start/End: Complemental strand, 4480622 - 4480366
Alignment:
| Q |
173 |
tgtatagtttaattatgctattgaagaatacaagggttagcattacattctccaacactttttaatatactcttttttcattattcaaaatttacacgag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4480622 |
tgtatagtttaattatgctattgaagaatacaagggttagcatcacattctcctacaatttttaatatactctttt--cattattcaaaatttacacgag |
4480525 |
T |
|
| Q |
273 |
tttcaccaaattagttaggcctcgtgtcaattttgaaatataaaacagtgttagaaaaatatatgtaaagcattatgctgctataactattcttaaaatt |
372 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4480524 |
tttcaccaaattatttaggcctcgtgtaaattttagaatataaaacagtgttagaaaaatatatgtaaagcattatgctgctataactattcataaaatt |
4480425 |
T |
|
| Q |
373 |
agggtattcatggattgacctaggaaatccggtgatttaatttatttgattaaggatat |
431 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4480424 |
agggtattcatggattgacctaggaaatctggtgatttaatttatttgattaaggatat |
4480366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University