View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6774_low_8 (Length: 434)
Name: NF6774_low_8
Description: NF6774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6774_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 3794256 - 3794454
Alignment:
| Q |
18 |
caaaggtactgcagaattgacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagcctgccatgcctgtaccgttgactgctcccta |
117 |
Q |
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| T |
3794256 |
caaaggtactgcataatcgacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagcctgccatgtctggaccgttgactgctcccta |
3794355 |
T |
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| Q |
118 |
catttagccaggggcagctcctggctatggccttggcaccttttatgatatattttcctgcgtgccttcagcccttcattgttccaagaaaaacaattc |
216 |
Q |
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| T |
3794356 |
catttagccaggggcagctcctcgctatggccttggcaccttttataatatatttacctgcgtgccttcagcccttcattgttccaagaaaaacaattc |
3794454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 7783341 - 7783161
Alignment:
| Q |
26 |
ctgcagaattgacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagcctgccatgcctgtaccgttgactgctccctacatttagc |
125 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||| | |||||||||||||||| ||||||| |
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| T |
7783341 |
ctgcagaagcgacatcaccactgcaaaagcaaatggagattagatcattctcctgcaaagcctaccatgcctgcaacgttgactgctccctaaatttagc |
7783242 |
T |
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| Q |
126 |
caggggcagctcctggctatggccttggcaccttttatgatatattt--tcctgcgtgccttcagcccttcattgttccaa |
204 |
Q |
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| T |
7783241 |
caggggcagctcttggctttggccttggcatcttttatactatatttcaacctgcgtgccttcagcccttcattgttccaa |
7783161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 7783002 - 7782949
Alignment:
| Q |
367 |
ctacaacagtgttgtacccatttgcaaatctgatttcaattctgcctcctgtga |
420 |
Q |
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| T |
7783002 |
ctacaatagtgttgtacccatttgcaaatctgatttcaattccacctcctgtga |
7782949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 3794593 - 3794642
Alignment:
| Q |
367 |
ctacaacagtgttgtacccatttgcaaatctgatttcaattctgcctcctgtga |
420 |
Q |
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| T |
3794593 |
ctacaacagtgttgtacccatttgcaaatc----ttcaattctgcctcctgtga |
3794642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 3794478 - 3794512
Alignment:
| Q |
252 |
cccaatacattcatctcctacttttcttatttggt |
286 |
Q |
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| T |
3794478 |
cccaatacattcatctcctacttttcttatttggt |
3794512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 6660985 - 6660787
Alignment:
| Q |
18 |
caaaggtactgcagaattgacatcaccactgcaaaagcaaatagagattagacctttctcctgcaaagcctgccatgcctgtaccgttgactgctcccta |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |
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| T |
6660985 |
caaaggtactgcagaatcgacatcaccactgcaaaagcaaatagagattagacctttctcttgcaaagcctgccatgtctggactgttgactgctcccta |
6660886 |
T |
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| Q |
118 |
catttagccaggggcagctcctggctatggccttggcaccttttatgatatattttcctgcgtgccttcagcccttcattgttccaagaaaaacaattc |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6660885 |
catttagccaggggcagctcctggctatggccttgacaccttttataatatatttacctgcgtgccttcagcccttcattgttccaagaaaaacaattc |
6660787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 6660636 - 6660587
Alignment:
| Q |
367 |
ctacaacagtgttgtacccatttgcaaatctgatttcaattctgcctcctgtga |
420 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6660636 |
ctacaacagtgttgtacccatttgcaaatc----ttcaattctgcctcctgtga |
6660587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 6660751 - 6660717
Alignment:
| Q |
252 |
cccaatacattcatctcctacttttcttatttggt |
286 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6660751 |
cccaatacattcatctcctacttttcttatttggt |
6660717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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