View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_high_10 (Length: 447)
Name: NF6776_high_10
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 46898555 - 46898152
Alignment:
| Q |
19 |
agaaagcagggtgaaaaatgaataaaatagtgatatcgggaacaggcaacagcaaagtaacacttttgaggcggtgactctctacatgttaatttgtaca |
118 |
Q |
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| T |
46898555 |
agaaagcagggtgaaaaatgaataaaatagtgatatcgggaacaggcaacagcaaagtaacacttttgaggcggtgactctctacatgttaatttgtaca |
46898456 |
T |
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| Q |
119 |
tatcaattcatcatatatataacattgtacagtgaggcaatagtatgtcataatatttatgttttgaatcctatgtatgatattgataagttatttgtag |
218 |
Q |
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| T |
46898455 |
tatcaattcatcatatatataacattgtacagtgaggcaatagtatgtcataatatttatgttttgaatcctatgtatgatattgataagttatttgtag |
46898356 |
T |
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| Q |
219 |
tcaaggtgatttgacataggtctagcatgnnnnnnnaaaccaatataatcaagtgtgtttttaggcataatcgaacaaaaacaatgggccgagcatgaac |
318 |
Q |
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| T |
46898355 |
tcaaggtaatttgacataggtctagcatgtttttttaaaccaatataatcaagtgtgtttttaggcgtgatcgaacaaaaacaatgggccgagcatgaac |
46898256 |
T |
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| Q |
319 |
agtgtctgccgatatggatgttgagacgctcaagtcagtatgagagcaaagaagaagaggtatcaagtggaaagagttgtgtaccatgtattatatgatg |
418 |
Q |
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| T |
46898255 |
agtgtctgccgatatggatgttgacacgctcaagtcagtatgagagcaaagaggaagaggtatcaagtggaaagagttgtgtaccatgcattatatgatg |
46898156 |
T |
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| Q |
419 |
aatg |
422 |
Q |
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|||| |
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| T |
46898155 |
aatg |
46898152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 32715284 - 32715228
Alignment:
| Q |
347 |
ctcaagtcagtatgagagcaaagaagaagaggtatcaagtggaaagagttgtgtacc |
403 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
32715284 |
ctcaagttagtatgagagcaaagagtgagaggtatcaagtggaaggaattgtgtacc |
32715228 |
T |
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