View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6776_high_12 (Length: 418)
Name: NF6776_high_12
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 38146137 - 38146522
Alignment:
| Q |
18 |
caggatttccaagtgatacaccacctgaagttcttcttaaaggaaaaccaacattcaagaattctttcaaagcaaaatcagattttgtgagggaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38146137 |
caggatttccaagtgatacaccacctgaagttcttcttaaaggaaaaccaacattcaagaattctttcaaagcaaaatcagattttgtgagggaaccaat |
38146236 |
T |
|
| Q |
118 |
accagaaactggtattgaaggattgtggcagaggctgttgagtgaagatagtcctttgatgatttggaatccatatggtggaaaaatgagtgaattttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38146237 |
accagaaactggtattgaaggattgtggcagaggctgttgagtgaagatagtcctttgatgatttggaatccatatggtggaaaaatgagtgaattttca |
38146336 |
T |
|
| Q |
218 |
gaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgttgcaaagcatgtag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38146337 |
gaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgttgcaaagcatgtag |
38146436 |
T |
|
| Q |
318 |
actggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38146437 |
actggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgat |
38146522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 25 - 403
Target Start/End: Complemental strand, 11786676 - 11786298
Alignment:
| Q |
25 |
tccaagtgatacaccacctgaagttcttcttaaaggaaaaccaacattcaagaattctttcaaagcaaaatcagattttgtgagggaaccaataccagaa |
124 |
Q |
| |
|
||||| ||||||||||||||||||| | ||| |||||||| ||||||||||||||| ||||||||||| |||||||| || || ||||| ||||| ||| |
|
|
| T |
11786676 |
tccaaatgatacaccacctgaagttttgcttgaaggaaaatcaacattcaagaattacttcaaagcaaagtcagatttcgtaagagaaccgataccggaa |
11786577 |
T |
|
| Q |
125 |
actggtattgaaggattgtggcagaggctgttgagtgaagatagtcctttgatgatttggaatccatatggtggaaaaatgagtgaattttcagaatctg |
224 |
Q |
| |
|
|| ||| | ||||||| ||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||| | |||| | ||||| ||||||| |
|
|
| T |
11786576 |
acgggtttacaaggattatggcaaaggttgttggaagaagacagtcctttgatgatttggaatccatatggtggcatgatgaacaatttttcggaatctg |
11786477 |
T |
|
| Q |
225 |
atagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgttgcaaagcatgtagactggat |
324 |
Q |
| |
|
||| ||||||||| || |||||||||||| | || ||||||||||| || || | |||||||| || |||||||||| | |||||||||| || ||||| |
|
|
| T |
11786476 |
atatcccttttcctcacagaaatggaacactttacaaaattcagtatttaactctttggcaagatggagacaagaatgcttcaaagcatgttgattggat |
11786377 |
T |
|
| Q |
325 |
taggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgat |
403 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
11786376 |
caggaagctttataactacatgaccccttatgtgtctaagtttccaagggaagcatatgtgaactatagagatcttgat |
11786298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 118 - 347
Target Start/End: Complemental strand, 26039779 - 26039551
Alignment:
| Q |
118 |
accagaaactggtattgaaggattgtggcagaggctgttgagtgaagatagtcctttgatgatttggaatccatatggtggaaaaatgagtgaattttca |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| |||| | |||||| || ||| ||||| |||||||||||||||||||| | |||| |||||||| |
|
|
| T |
26039779 |
accagaaactggttttgaaggattgtggcaaaggttgtt-attgaagacagcattttaatgatatggaatccatatggtggaaagaggagtcaattttca |
26039681 |
T |
|
| Q |
218 |
gaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgttgcaaagcatgtag |
317 |
Q |
| |
|
|||| |||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| |||||| ||| ||| |
|
|
| T |
26039680 |
gaatatgatagccgttttcaccatagaaatgaaatgttgtataaaattcagtacttgtctatatggcaagatggagacaagaatgctgcaaatcatatag |
26039581 |
T |
|
| Q |
318 |
actggattaggaagctttataactatatga |
347 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
26039580 |
attggattaggaagctttataactatatga |
26039551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 337
Target Start/End: Complemental strand, 26029309 - 26029098
Alignment:
| Q |
125 |
actggtattgaaggatt-gtggcagaggctgttgagtgaagatagtcctttgatgatttggaatccatatggtggaaaaatgagtgaattttcagaatct |
223 |
Q |
| |
|
|||| |||||||||||| | |||| ||| |||||| | ||||||| ||||||||||| ||||| |||||| ||||||| |||||| | |||||||||||| |
|
|
| T |
26029309 |
actgatattgaaggatttggggcaaaggttgttgactaaagatagacctttgatgatatggaacccatatagtggaaagatgagtcagttttcagaatct |
26029210 |
T |
|
| Q |
224 |
gatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgttgcaaagcatgtagactgga |
323 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||| ||||| |||| |||| |||| |
|
|
| T |
26029209 |
gatagaccttttcctcatagaaatggaaca--ctataaaattcaatacttgtctgtatggcaagatggtgacaagaatgctgcaaggcatatagattgga |
26029112 |
T |
|
| Q |
324 |
ttaggaagctttat |
337 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
26029111 |
tcaggaagcattat |
26029098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 2197261 - 2197324
Alignment:
| Q |
188 |
ccatatggtggaaaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaa |
251 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||| |
|
|
| T |
2197261 |
ccatatggtggaaaaatgagtgaaatttcagaatctgaaatcccttttccacacagaaaaggaa |
2197324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 2184676 - 2184739
Alignment:
| Q |
188 |
ccatatggtggaaaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaa |
251 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | ||||||||| || ||||| |||| |
|
|
| T |
2184676 |
ccatatggtggaaaaatgagtgaaatttcagaatctgaaatcccttttcctcacagaaaaggaa |
2184739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 2153065 - 2153125
Alignment:
| Q |
191 |
tatggtggaaaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaa |
251 |
Q |
| |
|
|||||||||| | ||| |||| ||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
2153065 |
tatggtggaagactgaatgaaatttcagaatctgaaatcccttttccacatagaaaaggaa |
2153125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 2176724 - 2176784
Alignment:
| Q |
191 |
tatggtggaaaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaa |
251 |
Q |
| |
|
|||||||||| | ||| |||| ||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
2176724 |
tatggtggaagactgaatgaaatttcagaatctgaaatcccttttccacatagaaaaggaa |
2176784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University