View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_high_18 (Length: 380)
Name: NF6776_high_18
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 28926862 - 28926499
Alignment:
| Q |
1 |
ctcttcaactctaagggattatactttttatgtgatatatttatttagttcctagcattgctgtagaaaactgcaccagaattgacaacctcgtaaactt |
100 |
Q |
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| T |
28926862 |
ctcttcaactctaagggattatactttttatgtgatatatttatttagttgctagcattgctgtagaaaactgcaccagaattgacaacctcgtaaactt |
28926763 |
T |
|
| Q |
101 |
tttaaaccgtgttggttgttgcgattaaattcattctttattatgttttctttgtctgttcctgtttaagaaaatatggccaaatgtattttaattactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926762 |
tttaaaccgtgttggttgttgcgattaaattcattctttattatgttttctttgtctgttcctgtttaagaaaatatggccaaatgtattttaattactt |
28926663 |
T |
|
| Q |
201 |
tgatgctgaatagcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgt |
300 |
Q |
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| T |
28926662 |
tgatgctgaatggcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgt |
28926563 |
T |
|
| Q |
301 |
ttgtggaagatgcttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtagg |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926562 |
ttgtggaagatgcttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtagg |
28926499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 364
Target Start/End: Complemental strand, 28917598 - 28917236
Alignment:
| Q |
2 |
tcttcaactctaagggattatactttttatgtgatatatttatttagtt-cctagcattgctgtagaaaactgcaccagaattgacaacctcgtaaactt |
100 |
Q |
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| T |
28917598 |
tcttcaactctatgagattttactttttatgtgatatatttatttattttcccagcactgttgtagaacactgtaccggaataggcaaccttgtaaactt |
28917499 |
T |
|
| Q |
101 |
tttaaaccgtgttggttgttgcgattaaattcattctttattatgttttctttgtctgttcctgtttaagaaaatatggccaaatgtattttaattactt |
200 |
Q |
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| ||| | |||| |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||| ||||||||||| || |
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| T |
28917498 |
tataacctgtgtaggttgttgtgattaaattcattcttttttatgttttctttgtatgttcttgtttaagagaatatggcaaaatatattttaattattt |
28917399 |
T |
|
| Q |
201 |
tgatgctgaatagcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgt |
300 |
Q |
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| T |
28917398 |
ggatgccgaatgacttttgaataatttt-ataggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgt |
28917300 |
T |
|
| Q |
301 |
ttgtggaagatgcttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtagg |
364 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
28917299 |
ttgtggaaaatgcttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtagg |
28917236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 364
Target Start/End: Complemental strand, 28893835 - 28893462
Alignment:
| Q |
2 |
tcttcaactctaagggattatact-ttttatgtgatatatttatttagtt-----cctagcattgctgt---agaaaactgcaccagaattgacaacctc |
92 |
Q |
| |
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|||||||||||||| |||| || |||||||||||||||||||||| || |||||||||| ||| |||| ||||||| |||||| ||||||| |
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| T |
28893835 |
tcttcaactctaagagatttcaccattttatgtgatatatttatttatttactttcctagcattgttgttatagaacactgcactggaattggcaacctc |
28893736 |
T |
|
| Q |
93 |
gta-aactttttaaacc-gtgttggtt-gttgcgattaaattcattctttattatgttttctttgtctgttcctgtttaagaaaatatggccaaatgtat |
189 |
Q |
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||| || |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||||| ||||| || |
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| T |
28893735 |
gtataaatttttaaacctgtgttggtttgttgcgattaaattcattcttttttatgttttctttgtctgttcatgagtaagagaatatggcaaaatgcat |
28893636 |
T |
|
| Q |
190 |
tttaattactttgatgctgaatagcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgc |
289 |
Q |
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| T |
28893635 |
tttaattcttttcatgctgaatgacttttgaataa-ttttataggttcccattattgtaacggatgccatggagcatcgaagtttatgtgcttgtgctgc |
28893537 |
T |
|
| Q |
290 |
ccaatagctgtttgtggaagatgcttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtagg |
364 |
Q |
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||||||||| ||||| ||| ||||||| ||| |||||||||||| |||||||||||||| ||||||||||||| |
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| T |
28893536 |
ccaatagctttttgtagaaaatgcttccatggtgctgaatttgctcttgtcaaaagaaacagaggattttgtagg |
28893462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 117 - 361
Target Start/End: Complemental strand, 28936949 - 28936705
Alignment:
| Q |
117 |
tgttgcgattaaattcattctttattatgttttctttgtctgttcctgtttaagaaaatatggccaaatgtattttaattactttgatgctgaatagctt |
216 |
Q |
| |
|
||||| |||||||| |||||||| || |||||||||||||| ||| ||||||||| || ||||| ||||||||||||||| |||||||||||||| || |
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| T |
28936949 |
tgttgtgattaaatgcattctttttt-tgttttctttgtcttttcatgtttaagagaaaatggcaaaatgtattttaattcttttgatgctgaataaatt |
28936851 |
T |
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| Q |
217 |
ttgaataatttt-tataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtttgtggaagatgctt |
315 |
Q |
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|||||||||||| |||||||||||| ||||||||| | ||| ||||| | ||||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
28936850 |
ttgaataattttatataggttcccactattgctacatatgccgtagaaaaccgaagtttatgtgcttgtgctgcccaaaagctgtttgtggaaattgcta |
28936751 |
T |
|
| Q |
316 |
ctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgt |
361 |
Q |
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| | | ||||| |||||| | ||||||| ||||||||||||||||| |
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| T |
28936750 |
ccagggtgctgtatttgctaatgtcaaacgaaacaaaggattttgt |
28936705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 364
Target Start/End: Complemental strand, 28903646 - 28903466
Alignment:
| Q |
182 |
aaatgtattttaattactttgatgctgaatagcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgct |
281 |
Q |
| |
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| T |
28903646 |
aaatgtattttaatgattttgatgctgaatttctt--gaataatttttatagcttcccattcttgctaccaatgcggtggaatatcaaagtttatgtgct |
28903549 |
T |
|
| Q |
282 |
tgtgttgcccaatagctgtttgtggaagatgcttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtagg |
364 |
Q |
| |
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|||||||| |||||||| ||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |
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| T |
28903548 |
tgtgttgcacaatagctttttgtggaaaatgcttctatggtgctgaatttgctcttgtcaaaggaaacaaaggattttgtagg |
28903466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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