View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_high_19 (Length: 352)
Name: NF6776_high_19
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 45479649 - 45479301
Alignment:
| Q |
1 |
tattttgtaactgaaaatttagcgtgagtgtgggggtatgacgcctcaattaaacacatctgattttatgagaagacggtggtaattcaaaatttggtcg |
100 |
Q |
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| T |
45479649 |
tattttgtaaatgaaaatttagcgtgagtgtgggggtatgacgcctcaattaaacacatctgattttatgagaagacggtggtaattcaaaatttggtcg |
45479550 |
T |
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| Q |
101 |
taagttgcacatattccaactaagattctaaaaag-gttattaataatttaatattgttaaatttactcatgttgaagaccgaatgaagtattcggccag |
199 |
Q |
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| T |
45479549 |
caagttgcacatattccaactaagattctaaaaaaagttattaataatttaatattgttaaatttactcatgttgaagaccgaatgaagtattcggccag |
45479450 |
T |
|
| Q |
200 |
aagatgcacttgttccgctgggggatcatactatttttggtaagttttaaaaaatattatttcagttctccaatttttatcatgataattttcattttta |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45479449 |
aagatgcacttgttccactgggggatcatactatttttggtaagttttaaaaaatattatttcagttctccaatttttatcatgataattttcattttta |
45479350 |
T |
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| Q |
300 |
ctataaatggtaagtacacgccttcatactgtttttcagatgtccatct |
348 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
45479349 |
ctataaatggtaaatacacgccttcatactgtttttcagaggtccatct |
45479301 |
T |
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