View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_high_20 (Length: 347)

Name: NF6776_high_20
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6776_high_20
NF6776_high_20
[»] chr4 (2 HSPs)
chr4 (2-335)||(56527131-56527464)
chr4 (257-300)||(50251911-50251954)
[»] chr6 (2 HSPs)
chr6 (254-293)||(33547745-33547784)
chr6 (254-294)||(16419895-16419935)
[»] chr3 (3 HSPs)
chr3 (255-293)||(33291623-33291661)
chr3 (255-293)||(44291414-44291452)
chr3 (256-293)||(46476853-46476890)
[»] chr8 (1 HSPs)
chr8 (256-293)||(41158-41195)
[»] chr7 (1 HSPs)
chr7 (241-293)||(12264720-12264772)
[»] chr5 (1 HSPs)
chr5 (256-300)||(26325921-26325965)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 335
Target Start/End: Complemental strand, 56527464 - 56527131
Alignment:
Q  2 gggctggtcacacttaagcttccagatcagaatgagatctttgaatctgctgaggtgagtgattcatatgcccgtattatgattctatggtttagaaaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56527464 gggctggtcacacttaagcttccagatcagaatgagatctttgaatctgctgaggtgagtgattcatatgcccgtattatgattctatggtttagaaaaa 56527365  T
Q  102 ggtgcgagagggatgagatttgattggaaactgtattcaatgttccctaactaattgataccgcacacacagcttttgtagaaaggttatggtttaccag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  56527364 ggtgcgagagggatgagatttgattggaaactgtattcaatgttccctaactaattgatactgcacacacagcttttgtagaaaggttatggtttaccag 56527265  T
Q  202 aaaaaacaaagctggtacaaacagttacatgacttaggcaaattgttcctgtggtcctttaagttattttattgtaacaaattagtcctttatatttttg 301  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56527264 aaaaaacaaagctggtacaaacagttacatgaattaggcaaattgttcccgtggtcctttaagttattttattgtaacaaattagtcctttatatttttg 56527165  T
Q  302 ttttcccaaattcgtcctttaactttcatgatgt 335  Q
    ||||||||||||||||||||||||||||| ||||    
T  56527164 ttttcccaaattcgtcctttaactttcataatgt 56527131  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 50251954 - 50251911
Alignment:
Q  257 cctttaagttattttattgtaacaaattagtcctttatattttt 300  Q
    |||||||||||||| ||| ||||||||||||||||||| |||||    
T  50251954 cctttaagttatttaattataacaaattagtcctttatgttttt 50251911  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 33547745 - 33547784
Alignment:
Q  254 ggtcctttaagttattttattgtaacaaattagtccttta 293  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  33547745 ggtcctttaagttatttaattgtaacaaattggtccttta 33547784  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 16419935 - 16419895
Alignment:
Q  254 ggtcctttaagttattttattgtaacaaattagtcctttat 294  Q
    ||||||||||| ||||| ||||||||||||| |||||||||    
T  16419935 ggtcctttaagctatttaattgtaacaaattggtcctttat 16419895  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 33291661 - 33291623
Alignment:
Q  255 gtcctttaagttattttattgtaacaaattagtccttta 293  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  33291661 gtcctttaagttatttaattgtaacaaattagtacttta 33291623  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 44291452 - 44291414
Alignment:
Q  255 gtcctttaagttattttattgtaacaaattagtccttta 293  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  44291452 gtcctttaagttatttaattgtaacaagttagtccttta 44291414  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 46476853 - 46476890
Alignment:
Q  256 tcctttaagttattttattgtaacaaattagtccttta 293  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  46476853 tcctttaagttatttaattgtaacaaattagtctttta 46476890  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 41195 - 41158
Alignment:
Q  256 tcctttaagttattttattgtaacaaattagtccttta 293  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  41195 tcctttaaattatttaattgtaacaaattagtccttta 41158  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 12264720 - 12264772
Alignment:
Q  241 aaattgttcctgtggtcctttaagttattttattgtaacaaattagtccttta 293  Q
    ||||||| || ||||||||||||||||||| ||||||| ||||| ||| ||||    
T  12264720 aaattgtaccggtggtcctttaagttatttaattgtaataaattggtcattta 12264772  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 26325965 - 26325921
Alignment:
Q  256 tcctttaagttattttattgtaacaaattagtcctttatattttt 300  Q
    ||||||||||||||| ||||||  |||||||||||||| ||||||    
T  26325965 tcctttaagttatttaattgtattaaattagtcctttaaattttt 26325921  T

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