View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_high_25 (Length: 275)
Name: NF6776_high_25
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 27931039 - 27931293
Alignment:
| Q |
21 |
ctaaatgactaaaacaaaacaactatgaagggtatacaaaagcacatatctcaatctagagcaatcagtcacgcactactaatacaatccagcacacccg |
120 |
Q |
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| T |
27931039 |
ctaaatgactaaaacaaaacaactatgaagggtatacagaagcacatatctcaatctagagcaatcagtcacgcactactagtacaatccagcacacccg |
27931138 |
T |
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| Q |
121 |
taatcaaatgcgaaatcaaattgcnnnnnnncaaaatataggtgtgtggcttgatgaacactggatctagattttgattacgtcgagtgagtctgttcac |
220 |
Q |
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| T |
27931139 |
taaccaaatgcgaaatcaaattgcaaaaaaacaaaatataggtgtgtggcttgataaacactggatctagattttgattacgtcgagtgagtctgttcac |
27931238 |
T |
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| Q |
221 |
caacacggtaacgaatctaaacacctacaacctactaccaaaacaacaccaaact |
275 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
27931239 |
caacacggtaacgaatctaaacacctacaatctactaccaaaacaacaacaaact |
27931293 |
T |
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