View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6776_high_26 (Length: 273)
Name: NF6776_high_26
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 43082978 - 43083228
Alignment:
| Q |
1 |
aacaacgataagcacttctaaccaagtacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082978 |
aacaacgataagcacttctaaccaagtacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactt |
43083077 |
T |
|
| Q |
101 |
tttcaacattttccagacttaccaaaccatgaaacataccaacattttgtactatgactatcgaagaagccacttgcgccttaatcaaaactacttcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083078 |
tttcaacattttccagacttaccaaaccatgaaacataccaacagttcgtactatgactatccaagaagccacttgcgccttaatcaaaactacttcacc |
43083177 |
T |
|
| Q |
201 |
aaacacactcagaacgttttatacaaaggaaactgctaataatatctttag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083178 |
aaacacactcagaacgttttatacaaaggaaactgctaataatatctttag |
43083228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University