View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_high_31 (Length: 243)
Name: NF6776_high_31
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_31 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 8431974 - 8432079
Alignment:
| Q |
138 |
aatttccatgttagaaagtagctgtgtttacaagttaatgcaacatagatcaagtcatgtaatatttagctaggcaagcttaatttaatttacattcgag |
237 |
Q |
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| T |
8431974 |
aatttccatgttagaaagtagctgtgtttacaagttaatgcaacatatatcaattcatgtaatatttagctaggcaagcttaatttaatttacattcgag |
8432073 |
T |
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| Q |
238 |
tatttt |
243 |
Q |
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|||||| |
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| T |
8432074 |
tatttt |
8432079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 8431318 - 8431362
Alignment:
| Q |
5 |
gagatggacatcatacatcgattaaggtaaatatgcatgcaactt |
49 |
Q |
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| T |
8431318 |
gagattgacatcatacatcgattaaggtaaatatgcatgcaactt |
8431362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 8437594 - 8437640
Alignment:
| Q |
197 |
taatatttagctaggcaagcttaatttaatttacattcgagtatttt |
243 |
Q |
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| T |
8437594 |
taatatttggctaggcaagcttagtttaattaacattcaagtatttt |
8437640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 8440819 - 8440865
Alignment:
| Q |
197 |
taatatttagctaggcaagcttaatttaatttacattcgagtatttt |
243 |
Q |
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| T |
8440819 |
taatatttggctaggcaagcttagtttaattaacattcaagtatttt |
8440865 |
T |
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