View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6776_high_36 (Length: 222)
Name: NF6776_high_36
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 39004992 - 39005183
Alignment:
| Q |
15 |
aatataaaagttccaactaattattaaatgactactaaggctaaacttttaccgtaagtaacattaaatttccaaataagttatatatgtttagctccta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39004992 |
aatataaaagttccaactaattattaaatgactactaaggctaaacttttaccgtaagtaacataaaatttccaaataagttatatatgtttagctccta |
39005091 |
T |
|
| Q |
115 |
ccaagtttggttcccacaagcacaattggtacagttggagcataatgtctcagttcaggaatccactgcataaaattagctagtgttagatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39005092 |
ccaagtttggttcccacaagcacaattggtacagttggagcataatgtctgagttcaggaatccactgcataaaattagctagtgttagatt |
39005183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 34676933 - 34676875
Alignment:
| Q |
124 |
gttcccacaagcacaattggtacagttggagcataatgtctcagttcaggaatccactg |
182 |
Q |
| |
|
|||||||| |||||||| || ||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
34676933 |
gttcccaccagcacaataggcacatttggagcataatgtctcagctcagatatccactg |
34676875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University