View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6776_high_4 (Length: 573)
Name: NF6776_high_4
Description: NF6776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6776_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 28927407 - 28927966
Alignment:
| Q |
1 |
gaccaattagaaaaaacagcaaactagcagatgatatgataaatgcttttaggctgatatcactcaatttaaatacgatacgataaatgttacaaaattt |
100 |
Q |
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| T |
28927407 |
gaccaattagaaaaaacagcaaactagcagatgatatgataaatgcttttaggctgatatcactcaatttaaatacgatacgataaatgttacaaaattt |
28927506 |
T |
|
| Q |
101 |
gtttcatattaatcaacgtttacggnnnnnnnncatcactgattaagaaaaacaatgatgagtgtaacaaatctatgaagcgcagacatggacactgaag |
200 |
Q |
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| T |
28927507 |
gtttcatattaatcaacgtttacg-atttttttcatcactgattaagaaaaacaatgatgagtgtaacaaatctatgaagcgcagacatggacaccgaag |
28927605 |
T |
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| Q |
201 |
acgacattgatacaaacaaaggtaaaagtttgaaaaagtcaattaaatgaacatgatcacacacacatgtgtcaatgtcgaacactccttccaccacagg |
300 |
Q |
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| T |
28927606 |
acgacattgatacaaacaaaggtaaaagtttgaaaaagtcaattaaatgaacatgatctcacacacatgtgtcaatgtcgaatgctccttccatcacagg |
28927705 |
T |
|
| Q |
301 |
tgtcagggctactaacaataaataaatgttactcaatcaatttcatgtaatgactttggagtatgaacacactgttcatttggggaaaatattagattaa |
400 |
Q |
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| T |
28927706 |
tgtcagggctactaacaataaataaatgttactcaatcaatttcatgtaatgactttggagtatgaacacactgttcatttggggaaaatattagattaa |
28927805 |
T |
|
| Q |
401 |
aaattaatttcattgaaaacctaataaactatctatcagtaaataagaaaattttaaaggnnnnnnnngaaaactattgattaa-ttgaaacaaagagag |
499 |
Q |
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| T |
28927806 |
aaattaatttcattgaaaagctaataaactatctatcagtaaataagaaaattttaaaggaaaaaaaagaaaactattgattaatttgaaacaaagagag |
28927905 |
T |
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| Q |
500 |
taaattaaatgggtatcgtaggtgatgatccctaaaaatgtcacaaactcatgcaacacca |
560 |
Q |
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| T |
28927906 |
taaattaaatgggtatcgtaggtgatgatccctaaaaatgtcacaaactcatgcaacacca |
28927966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 28904661 - 28904702
Alignment:
| Q |
139 |
ctgattaagaaaaacaatgatgagtgtaacaaatctatgaag |
180 |
Q |
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| T |
28904661 |
ctgattaagaaaaacaatgatgagtgtaacaaatctatgaag |
28904702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 28904773 - 28904830
Alignment:
| Q |
282 |
acactccttccaccacaggtgtcagggctactaacaataaataaatgttactcaatca |
339 |
Q |
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| T |
28904773 |
acacgccttccatcacaagtgtcagtgctactaacaataaataaatgttactcaatca |
28904830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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