View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6776_high_8 (Length: 487)

Name: NF6776_high_8

Description: NF6776

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6776_high_8

[»] chr8 (1 HSPs)

Alignment Details

Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 400; E-Value: 0

Query Start/End: Original strand, 16 - 487

Target Start/End: Original strand, 5440005 - 5440477

Alignment:

Q	16	aaactcacagtcgaacacggggcaccataaactcctgaatgaggaaaactaacacactacccacaaaactagcttagcagagcctatacaattaaggtca	115	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5440005	aaactcatagtcgaacacggggcaccataaactcctgaatgaggaaaactaacacactacccacaaaactagcttagcagagcctatacaattaaggtca	5440104	T

Q	116	tgttgtttggctaatatgcataatttagagacattcaattaaacacaaaacttattttgctatatttacatctctttaccggtcttccattttctatctg	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	5440105	cgttgtttggctaatatgcataatttagagacatccaattaaacacaaaacttattttgctatatttacatatctttaccggtcttcctttttctatctg	5440204	T

Q	216	ttcatgtatttcttggtgtagctnnnnnnncgtcttgggaaatttttcggttaaaaaggaaaatatagtaaaatgagtgtgagccccgtgatttatttat	315	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5440205	ttcatgtatttcttggtgtagctaaaaaaacgttttgggaaatttttcggttaaaaaggaaaatatagtaaaatgagtgtgagccccgtgatttatttat	5440304	T

Q	316	ttttgttgaaaagggtgcgtgatagccatggaggagaagaatttcattaaacattgattgtttcttttccaaccctatggttttacaatatacctcttaa	415	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	5440305	ttttgttgaaaagggtgcgtgatagccatggaggagaagaatttcattaaacattgactgtttcttttccaaccctatggttgtacaatatatctcttaa	5440404	T

Q	416	aattgctcaca-tttttggactaaatcgatttggataatgagaccaatatacctctcagtattcctccattgg	487	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5440405	aattgctcacattttttggactaaatcgatttggataatgagaccagtatacctctcaatattcctccattgg	5440477	T

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